Rhizobium etli CIAT 652: RHECIAT_CH0003115
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Entry
RHECIAT_CH0003115 CDS
T00720
Symbol
sigA
Name
(GenBank) RNA polymerase sigma factor protein (sigma-70)
KO
K03086
RNA polymerase primary sigma factor
Organism
rec
Rhizobium etli CIAT 652
Pathway
rec02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rec00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
RHECIAT_CH0003115 (sigA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rec03021
]
RHECIAT_CH0003115 (sigA)
Transcription machinery [BR:
rec03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RHECIAT_CH0003115 (sigA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
DUF5856
Phage_DsbA
DUF3106
DUF4351
Motif
Other DBs
NCBI-ProteinID:
ACE92063
UniProt:
B3PUI2
LinkDB
All DBs
Position
complement(3115640..3117697)
Genome browser
AA seq
685 aa
AA seq
DB search
MATKVKENEDAEVERDGASDGPLLDLSDDAVKKMIKAAKKRGYVTMDELNAVLPSEEVTS
EQIEDTMSMLSDMGINVIEDEEAEEAGASGGGDDDDAGGDEDSEGGELAPSGGTALATAK
KKEPTDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQALII
WRDELNEGTTLLREIIDLETTYSGPEAKAAPQFQSPEKIEADRKAAEEKEKTRRARSGDD
DITDVGGEGLPPEEEEEDEDESNLSLAAMEAELRPQVMETLDTIAETYKKLRKLQDQQVE
QRLSASGTLSSAQERRYKELKDELIKAVKSLSLNQNRIDALVEQLYDINKRLVSNEGRLL
RLAESYGVKRDSFLEQYQGAELDPNWMKSIGNLAARGWKEFAKGENTTIRDIRQEIQNLA
TETGISISEFRRIVHMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEG
NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSR
QMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNA
LLPIDAAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIR
QIEAKALRKLKHPSRSRKLRSFLDS
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccaaggtcaaagagaacgaagacgcggaagtcgaacgcgacggcgcaagcgac
ggccctcttctcgatctttccgacgacgcggtcaagaagatgatcaaggccgccaagaag
cgcggctatgtgacgatggatgagctcaacgccgttctgccgtccgaggaagtgacgtcc
gagcagatcgaagacacgatgtcgatgctgtcggacatgggcatcaacgtcatcgaggac
gaagaagccgaggaagccggcgcttccggcggcggcgatgacgacgatgcgggcggcgac
gaggacagcgaaggcggcgaactcgcgccttccggcggcaccgcgctggcgacggccaag
aagaaagaaccgaccgatcggaccgacgatccggtgcgcatgtatctgcgcgaaatgggc
tcggtggagctgctgtcgcgcgaaggcgaaatcgccatcgccaagcgcatcgaggccggc
cgcgagacgatgatcgcaggcctctgcgaaagcccgctgaccttccaggcgctgatcatc
tggcgcgacgaactcaacgaaggcacgacgctgctgcgcgagatcatcgatctcgaaacc
acctattccggccctgaagccaaggccgcgccgcagttccagagcccggagaagatcgag
gccgaccgcaaggctgccgaagagaaggaaaagacccgccgcgcccgctccggcgacgac
gacatcaccgatgtcggcggcgaaggcctgcctccggaggaggaggaagaggacgaggac
gaatccaacctttcgctggcggcgatggaagccgagcttcgcccgcaggtgatggagacg
ctcgatacgatcgccgagacctacaagaagctgcgcaagctgcaggaccagcaggtcgag
cagcgcctgtcggcgtccggcacgctgtcttcagcccaggagcgccgctacaaggagctc
aaggacgagctcatcaaggccgtcaagtcgctgtcgctcaaccagaaccgcatcgacgcc
ctggtcgagcagctttacgacatcaacaagcgcctcgtttccaacgaaggccgcctgctg
cgtctggccgaatcctacggcgtcaagcgcgatagcttcctggaacagtatcagggcgcc
gagctcgatccgaactggatgaagtcgatcggcaatctggccgcccgcggctggaaggaa
ttcgccaagggcgaaaacacgacgatccgcgacatccgccaggagatccagaatctggcg
accgagaccggcatctcgatctcggaattccgccgcatcgtccacatggtgcagaagggc
gagcgcgaagcgcgcatcgccaagaaggaaatggtcgaagcgaacctccgcctcgtcatc
tccatcgccaagaagtacacgaaccgcggcctgcagttcctcgacctcattcaggaaggc
aatatcggcctgatgaaggcggtcgacaagttcgaataccgccgcggctacaagttctcg
acttacgcgacgtggtggatccgtcaggcgatcacccgctcgattgccgaccaggcccgt
acgatccgcattccggtgcacatgatcgagacgatcaacaagatcgtccgtacctcgcgc
cagatgctgcacgagatcggccgcgagccgacgccggaagagctggccgaaaagctcgcc
atgccgctcgaaaaggtccgcaaggtcctgaagatcgccaaggagccgatctcgctcgaa
accccggtcggtgacgaagaggattcgcatctcggcgatttcatcgaggacaagaacgcg
ctgctgccgatcgatgcggccatccaggcgaacctgcgcgagacgaccacccgcgttctc
gcctcgctgacgccgcgcgaggaacgcgtgctgcgcatgcgcttcggcatcggcatgaac
accgaccatacgctcgaagaagtcggccaacagttctcggttacccgcgaacgtatccgc
cagatcgaagcgaaggcgctgcgcaagctcaagcatccgagccgttcgcgcaagctgcgc
tcgttcctcgacagctga
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