Rhizobium etli CIAT 652: RHECIAT_CH0003119
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Entry
RHECIAT_CH0003119 CDS
T00720
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rec
Rhizobium etli CIAT 652
Pathway
rec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RHECIAT_CH0003119 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rec03019
]
RHECIAT_CH0003119 (recQ)
03400 DNA repair and recombination proteins [BR:
rec03400
]
RHECIAT_CH0003119 (recQ)
Enzymes [BR:
rec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RHECIAT_CH0003119 (recQ)
Messenger RNA biogenesis [BR:
rec03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RHECIAT_CH0003119 (recQ)
DNA repair and recombination proteins [BR:
rec03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RHECIAT_CH0003119 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
HHH
ResIII
AAA_30
GARS_N
Motif
Other DBs
NCBI-ProteinID:
ACE92067
UniProt:
B3PUI6
LinkDB
All DBs
Position
complement(3121087..3122952)
Genome browser
AA seq
621 aa
AA seq
DB search
MSLTEGNEAGFSASDALFSAGRSPLEVLKQIYGYSSFRGKQQQVVEHVVSGGDAVVLFPT
GAGKSLCFQIPALCRNGVGIVVSPLIALMRDQVEAMKQLGIRAAALNSSLSREEFVEVRR
ALSGGKLDLLYVTPERILTDGFRELIANEKIALFAIDEAHCVSQWGHDFRPEYRELGRLG
DQYPGVPRIALTATADPHTRDDIVERLGLDSAEIFTTSFDRPNISYEIVERDQPRHQLLR
FLSDHKGDSGIVYCLSRAKVEDTADWLNGQGVRALPYHAGMDRALRDANQDAFLKEESLC
LVATVAFGMGIDKPNVRYVAHLDLPGSVEAYYQETGRAGRDGLPSEVWMAYGMADVIQRR
RMIDEGNAAAEIKRVERAKLNALLAICETASCRRQAILAHFGEAHAGQCGNCDTCLKPVE
TWEGTEAAIKALAAIYRTGERFGAGHVIDVLVGNVNEKTERFGHVDMPVFGAGKDIPVRT
WQSVCRQLLAMGLIRVDHEAYGALKLEPEARAVFKHERQVFFRKDRPASERRTKKVERSE
RKSALSGADGSLFEALRAERMAIAKSLGVPPYVVFPDTTLIAFATERPRSRKELLAISGV
GQAKLERYGDAFLEIILAHDD
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctgaccgaaggcaacgaagctggcttttccgcctccgatgcgctgttttccgcc
ggtcgctcgccgctcgaggttttgaagcagatctacggctattcctcctttcgcggcaaa
caacagcaggtggtcgagcacgtcgtctcaggcggcgatgcagtggtgctctttccgaca
ggagcgggcaaatcgctgtgcttccagatcccggcgctctgccgcaatggcgtcggcatc
gttgtttcgccgttgattgcgctgatgcgcgatcaggtggaggcgatgaagcagctcggc
atccgcgccgccgcactcaattcgtcgctgtcgcgcgaggagttcgtcgaggtccgccgc
gcgctttcgggcggcaagctcgatcttctctacgtgacgccggagcgtatcctgaccgac
ggcttccgcgagctgatcgccaatgagaagatcgcgctgtttgccattgacgaggcccat
tgcgtctcgcaatggggccatgatttccggccggaataccgtgagctcggccggcttggc
gaccaatatcccggtgttcccagaatagcgctgacggcaacggccgatccgcatacgcgc
gacgatatcgtcgagcggctggggctcgattctgccgagatcttcactaccagcttcgac
cggccgaacatcagctacgagatcgtcgagcgcgatcagccgcgccaccagcttctgcgc
ttcctgtcagaccataagggcgacagcggtatcgtctattgcctgtcgcgcgccaaggtc
gaggacacggccgactggctgaacgggcagggggttcgcgcactgccttatcatgccggc
atggaccgggcgcttcgtgacgccaatcaggatgccttcctgaaggaagagagcctctgc
ctggttgccaccgtcgccttcggcatgggcatcgacaaaccgaatgtgcgttacgtcgcc
catctcgacctgccgggttcggtggaagcctattaccaggagaccgggcgcgccggccgc
gacggcctgccgtcggaggtctggatggcctatggcatggccgatgtcatccagcgccgc
cggatgatcgacgagggcaatgccgccgcggagatcaagcgggtcgagcgcgccaagctc
aatgccttgctggcgatctgcgagactgcctcctgccgccggcaggcgatcctcgcccat
ttcggcgaagcccatgccggccagtgcggcaattgcgacacctgcctgaagccggtggag
acctgggaaggcacggaagcggcgatcaaggcgctggccgccatctatcgcaccggcgag
cgcttcggcgccggccacgtcatcgacgtgctcgtcggcaatgtcaatgagaagaccgag
cgtttcggccatgtcgatatgcccgttttcggcgccggcaaggacattcctgttcgcacc
tggcaatccgtctgccggcagctgctcgccatggggctgatccgggtcgatcacgaggcc
tatggggcgcttaaattggagccggaagcgcgcgccgtcttcaagcacgagcgacaggta
ttcttccgcaaggaccggcctgcctcggaacggcgcacgaagaaggtggagcgcagcgag
cgcaaatcggcgctgtcgggcgccgacggcagcctgttcgaggcgttgcgggccgagcgc
atggcgatcgccaaatcgctcggcgtgccgccctatgtcgtcttccccgatacgacgctg
attgccttcgccaccgaacggccgcgcagccgcaaggagctgctcgccatatcgggcgtc
gggcaggcgaagctcgaacgctatggcgacgccttcctggagatcatcctggcgcacgac
gattga
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