Rhizobium etli CIAT 652: RHECIAT_CH0003318
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Entry
RHECIAT_CH0003318 CDS
T00720
Name
(GenBank) putative DNA helicase protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rec
Rhizobium etli CIAT 652
Pathway
rec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RHECIAT_CH0003318
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rec03019
]
RHECIAT_CH0003318
03400 DNA repair and recombination proteins [BR:
rec03400
]
RHECIAT_CH0003318
Enzymes [BR:
rec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RHECIAT_CH0003318
Messenger RNA biogenesis [BR:
rec03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RHECIAT_CH0003318
DNA repair and recombination proteins [BR:
rec03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RHECIAT_CH0003318
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
T4SS-DNA_transf
HNH
Cas3-like_C_2
RecQ_Zn_bind
TLP1_add_C
HNH_5
Motif
Other DBs
NCBI-ProteinID:
ACE92266
UniProt:
B3PVP6
LinkDB
All DBs
Position
3335484..3337034
Genome browser
AA seq
516 aa
AA seq
DB search
MGGSDELSNLVTLCDGCHAAHHPNLAGGLARRAIERWAVRLARWLDADARAIESTMNFGP
VLRLFGVSHFRGGQLPIVLAALAGKSILVVSPTGSGKSLCFQIPALLRNGCTLVVSPLKT
LMADQVSGLLRKKIPATFVNSALNAEEKEIRYNMVGVNAVKFLYLAPERFFVKSQDEREV
LAESQPEFLVVDEAHCVDAWGRDFRPEYGRLAEVRKTLGSPPILAFTATAGHSMQKRILK
SLGIEDAEVFVRGVDRPNIALIRWQTAPSARHHEIASLLRLPVFAGRKAMVFVPTARIGH
ELQTDLKDNGLDVLFYHSKLGNEWERQELLKRFLGESRPVVNHIICTNAFGMGLDVPDVR
LVIHWQQPASVEDYLQEFGRAGRDGKQSVAVTFTETGRGRGRDVGLLQFMAEKTANSSGL
DDANARAMLKQRYSQIDDLTNLLSSRQCFRQGIVEYFEGPKVKPRLSLGMRILNWTFSKE
AVPRHFRYCCDACAAVDRRHETLPGHVASVFVKSIG
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atgggaggctctgacgagctttcgaacctagtgacgctctgcgacggttgccacgccgca
catcatcccaatctcgctggaggactggcgcggcgagcgatcgagcgatgggccgttcgg
cttgcacgctggctcgacgctgatgctcgcgctattgaatccacaatgaacttcggccca
gtgctccgcctgttcggcgtctcgcacttccggggtggtcaactaccgatcgtcctggcg
gccctcgccggaaagtccatcctcgtcgttagtccgactggatccgggaagtcgctgtgc
ttccagatccctgcccttctgcgcaacggctgcacactggtggtaagtccgctgaagact
ctcatggcggaccaggtctccgggcttctccgaaagaagattcctgcgaccttcgtcaac
agcgctctcaatgccgaggagaaggaaatccgttacaacatggtcggtgtgaacgcggtg
aagttcctttacctcgcgcccgagcgcttcttcgtgaagagccaggacgagcgggaggtg
ctggcagaaagccaacccgaatttcttgtcgtggacgaggctcactgcgttgatgcctgg
ggccgagatttccgaccggaatacggccgccttgccgaagtccggaagaccttgggatca
ccgccaattctcgccttcaccgcgacggcgggccactccatgcagaagcgcatcctcaaa
tcgctcgggattgaagatgccgaagtgttcgtccgcggcgtcgatcggccaaacatcgcc
ttgatacgatggcaaacggcaccatcagcgcgtcatcatgaaatagcgtcactgttgagg
cttccggtgttcgccggacgaaaggctatggtgttcgtgccgaccgcgcgcatcggtcat
gaacttcagaccgacctgaaggacaacgggctcgacgtcctgttctaccattccaagctg
gggaacgaatgggagcgccaggagctcctcaaacgcttcctgggcgagagccgcccggtg
gtaaaccacatcatctgcacgaacgccttcggaatgggactcgacgttccggatgttcgg
ctggtgatccattggcagcagcccgcttcggtcgaggactatctgcaggaattcggacgc
gccggccgcgacggcaagcagtccgtcgcggtgacgttcaccgagaccgggcgcggtcgc
ggacgcgacgtcggccttctccagttcatggccgagaagaccgccaacagctccggcttg
gacgatgccaacgcacgcgccatgctgaagcagcgatattcgcagatcgacgatctgacc
aatcttctctcatcaaggcaatgtttccgccaaggtatagtcgaatatttcgaaggcccg
aaggtgaagccccgcctaagcctagggatgaggatattgaactggaccttcagcaaggag
gccgtgccgaggcacttccggtactgctgcgatgcgtgtgcagccgttgatcgacgccac
gaaacactgcctgggcatgtcgcctccgtgtttgtgaaatcgatcggctga
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