Rhizobium etli CIAT 652: RHECIAT_CH0003375
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Entry
RHECIAT_CH0003375 CDS
T00720
Symbol
rhlE2
Name
(GenBank) ATP-dependent RNA helicase protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rec
Rhizobium etli CIAT 652
Pathway
rec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RHECIAT_CH0003375 (rhlE2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rec03019
]
RHECIAT_CH0003375 (rhlE2)
Enzymes [BR:
rec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RHECIAT_CH0003375 (rhlE2)
Messenger RNA biogenesis [BR:
rec03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RHECIAT_CH0003375 (rhlE2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
Helicase_RecD
AAA_22
Flavi_DEAD
Snf7
Motif
Other DBs
NCBI-ProteinID:
ACE92323
UniProt:
B3PW86
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All DBs
Position
3393976..3395673
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AA seq
565 aa
AA seq
DB search
MKPDRMVRSGHSRCGAPKGYALTNFESLGVSKPIVATLFQLGIETPTPIQEQAIPLLLQG
RDLIGLAQTGTGKTAAFGLPLIEKLLADERRPDNRTTRTLILAPTRELVNQIADNLKKFI
RKSPLRINVVVGGVSINKQQLQLEKGTDVLVATPGRLLDLVNRRAITLTTVRYLVLDEAD
QMLDLGFVHDLRKIAKLVPKKRQTMLFSATMPKAIADLAGEYLVDPVKVEVTPPGKAADK
VEQYVHFVAGKNDKTELLRKSLTENPDGRAIVFLRTKHGAEKLMKHLDNIGYSVASIHGN
KSQGQRERALKAFRDGSIKTLIATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTAR
AGRDGIAIAFCAPDEAKLLRDIERLMGIDIAVASGEPPANISNSGPRRGNGNGNNRNRGG
GQGRGEGRGEGRGDANRSEHRGSRQERRPRPERTGRNEDFRGQRRGETTPDLGPDNDLVS
TSDFRPSAKPQRPAHGGPNGHHANGEPSGHHRGNGRHAHGRPARKHGEDRGQHQAQGGEP
RREGNGGNRRGGSGSRNGGQRRERA
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccggatcgcatggtgcgttccggccatagtcgttgtggcgccccgaaaggttat
gccttgactaattttgaatcgcttggtgtctccaagccgatcgtcgccaccttgttccag
ctcggcatcgaaacgccgacgccgatccaggagcaggccatccctcttctcctccagggc
cgagacctgatcggtcttgcccagaccgggaccggcaagaccgccgccttcggcctgccg
ctcatcgaaaaactgcttgccgatgagcgccgccccgacaaccgcacgacgcggacgctg
atcctggcgccgactcgcgaactggtgaaccagatcgccgacaacctgaagaaattcatc
cgcaagtcgccgctgcgcatcaacgtcgtcgtcggcggcgtctcgatcaacaagcagcag
ctgcagctggaaaaaggcaccgatgttctcgtcgccacgcccggccgcctgcttgacctc
gtcaatcgtcgcgccatcaccctaaccacagtacgctatctcgtccttgatgaagccgac
cagatgctcgacctcggcttcgtgcacgatctgcgcaagatcgccaagctggtgccgaag
aagcgccagaccatgctgttttcggccaccatgccgaaggcgatcgccgatctcgccggc
gaatatctcgtcgatcccgtcaaggtcgaagtcacgcctccgggcaaggctgccgacaag
gtcgagcagtatgtccatttcgtcgccggcaagaacgacaagaccgaactgctgcgcaag
tcgctgaccgaaaacccggacggccgcgccatcgttttcctgcgcaccaagcacggtgcc
gagaagctgatgaagcacctcgacaatatcggctattccgtcgcctcgatccacggcaac
aagagccagggccagcgcgagcgggcgctcaaagcgttccgtgatggcagcatcaagacg
ctgattgccaccgacgttgccgcccgcggcatcgacatcccggccgtcagccacgtctac
aactacgatctgcctgaagtgcccgacgcctatgtccatcgcatcggccgcaccgcgcgc
gccggccgcgacggcatcgcgatcgccttctgcgcccccgacgaagccaagctgctgcgt
gacatcgagcgcctaatgggcatcgacatcgcagttgcaagcggcgaaccgccggccaac
atcagcaacagcggcccccgccgcggcaacggcaatggcaacaaccgcaatcgcggtggc
ggccagggtcgtggtgagggtcgcggcgaaggccgtggcgacgccaaccgctctgaacat
cgcggcagccgccaggaacgccgcccgcgtcccgagcggaccggccgcaacgaggatttc
cgcggccagcgccgcggcgaaaccacgccggacctcggccccgacaacgatctggtctcg
acctccgacttccgcccctcggcaaagccgcagcggcctgcgcatggcggccccaatggc
catcatgccaatggcgagccgagcggtcatcaccgcggcaacggccgccatgcgcacggc
cgcccggcccgcaagcacggtgaagatcgcggtcagcaccaggcccagggcggcgaaccg
cgccgcgagggcaatggcggcaaccgccgcggcggctctggctcccgcaatggcggccag
cgccgcgaacgcgcctga
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