Rhizobium etli CIAT 652: RHECIAT_CH0004219
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Entry
RHECIAT_CH0004219 CDS
T00720
Symbol
ligT
Name
(GenBank) 2'-5' RNA ligase protein
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
rec
Rhizobium etli CIAT 652
Brite
KEGG Orthology (KO) [BR:
rec00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rec03016
]
RHECIAT_CH0004219 (ligT)
Enzymes [BR:
rec01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
RHECIAT_CH0004219 (ligT)
Transfer RNA biogenesis [BR:
rec03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
RHECIAT_CH0004219 (ligT)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
ACE93148
UniProt:
B3PQZ4
LinkDB
All DBs
Position
complement(4291263..4291856)
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AA seq
197 aa
AA seq
DB search
MPRLFTALEIPRNAAMSLSLLRGGLPGARWIDVENYHITLRFIGDVDGRTADEIVERLDR
IDRPEFQFRLEGIGSFGSKKPHSVWAGVSQSPEMYALQGEIERICQRIGLPPDPRKFMPH
VTLARLKSSRLDDVVQYLAGRGNFHTATFTAPRFVLLSSRESVGGGPYLTEEVFPLHEAR
STPSASSRLLQPVKSLV
NT seq
594 nt
NT seq
+upstream
nt +downstream
nt
atgccgagactgtttaccgccctcgaaattccgcgcaatgcggcgatgagcctttcattg
ctgcgcggtggcctccccggagcacgatggatcgatgtggagaattaccacatcaccctg
cgcttcatcggtgatgtcgacggccgcacggccgatgaaatcgtcgaacggctcgaccgg
atcgaccggccggaattccagttccggctcgaaggcattggttccttcggctcaaagaaa
ccgcattcggtttgggccggcgtctcgcaatcgccggagatgtatgccctgcagggtgag
atcgagcgcatctgccagcgcatcggcctgccgccggacccgcgcaaattcatgccgcat
gtgacgctggcacggctgaaatcctcgcggctcgacgatgtcgtgcaatatctggccgga
cgcggcaacttccacaccgcgaccttcacggcaccgcgcttcgtgctgctttcgtcgcgc
gaatcggttggcggcggaccctacctgacagaggaagtgtttccgctgcacgaggcacgt
tcgacgcccagcgcttcgagcaggctgctgcagccggtcaagagcctggtatag
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