Rhizobium etli CIAT 652: RHECIAT_CH0004237
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Entry
RHECIAT_CH0004237 CDS
T00720
Symbol
dapF
Name
(GenBank) diaminopimelate epimerase protein
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
rec
Rhizobium etli CIAT 652
Pathway
rec00300
Lysine biosynthesis
rec00470
D-Amino acid metabolism
rec01100
Metabolic pathways
rec01110
Biosynthesis of secondary metabolites
rec01120
Microbial metabolism in diverse environments
rec01230
Biosynthesis of amino acids
Module
rec_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
rec00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
RHECIAT_CH0004237 (dapF)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
RHECIAT_CH0004237 (dapF)
Enzymes [BR:
rec01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
RHECIAT_CH0004237 (dapF)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DAP_epimerase
PhzC-PhzF
Motif
Other DBs
NCBI-ProteinID:
ACE93166
LinkDB
All DBs
Position
complement(4309225..4310130)
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AA seq
301 aa
AA seq
DB search
MSATVEFARMNGLGNKILVVDMRGRPDKVTPAAAVALNADPETEFDQIMAIHDPKADGTD
AFIDILNSDGSKAQACGNGTRCVVQALAAETGRKAFTFQTVAGILNAVEHEDGTISVDMG
QPVFDWNRIPLSEEFHDTSRIELQIGPIDNPVLHSPSAMSMGNPHAIFWVDRDVMSYDLA
RFGPLLENHPMFPERANITLAQVTSPTSMTTRTWERGAGLTLACGSAACSAAVSAARTGR
TGRKVTINVASAKPPATLSIEWRERDDHVIMTGPAEWEWSGRLDPATGLWSRDADRGAEA
Q
NT seq
906 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcaacggtcgaatttgcgaggatgaacgggcttggcaacaagatcctggtcgtc
gacatgcgcggccggcccgacaaggtgacgcccgcggcggctgtcgcgctcaatgccgat
cctgaaaccgagttcgatcagatcatggcgatccatgatccgaaggccgacggcaccgat
gccttcatcgatatcctgaattccgacggctcgaaggcgcaggcctgcggcaacggcaca
cgttgcgtcgtgcaggcgctcgccgccgagaccggccggaaggctttcaccttccagacg
gtcgccggcattctcaacgccgtcgagcacgaggacgggacgatttccgttgatatgggc
cagccggtgttcgattggaacaggatcccgctctcggaagaattccacgataccagccgc
atcgagctgcagatcggcccgatcgacaatccggtgctgcattcgccgtcggccatgtcg
atgggcaatccgcatgcgatcttctgggtggaccgggacgtgatgtcctacgatcttgcc
cgcttcggaccgctgctcgaaaaccatccgatgtttcccgagcgggccaatatcaccttg
gcgcaggtcacctcgccgacatcgatgacgacgcgcacctgggagcgcggtgcgggcctg
acgcttgcctgcggttcggccgcctgttccgccgccgtcagcgccgcccgcaccggccgc
accggccgcaaggtgacgatcaatgtggcaagcgccaagccgccggcgacactttcgatc
gaatggcgcgagcgcgacgatcacgtcatcatgaccggtccggccgagtgggaatggtcg
ggcaggctcgatcctgcgaccggcctctggtcgcgcgatgcggaccggggagccgaggcg
cagtga
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