Roseicyclus elongatus: roselon_01221
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Entry
roselon_01221 CDS
T03060
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
red
Roseicyclus elongatus
Pathway
red03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
red00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
roselon_01221
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
red03019
]
roselon_01221
Enzymes [BR:
red01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
roselon_01221
Messenger RNA biogenesis [BR:
red03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
roselon_01221
BRITE hierarchy
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GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
AAA_22
SAPC2_N
Motif
Other DBs
NCBI-ProteinID:
AHM03612
UniProt:
W8S0E7
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All DBs
Position
1212760..1214109
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AA seq
449 aa
AA seq
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MFDFDMLGLKPVLLLALKKQGFDTPTPIQNQAIPLAMDAHDILGLAQTGTGKTMAFGLPL
VDHLLDQPGKPAPKTAKALILAPTRELVNQIADSLRLLTHDTPLKVTTVVGGQSIGRQIS
VLSRGTDILVATPGRLIDLMDRGAVSLHTVRHLVLDEADQMLDLGFIHALRKIAPQLGTP
RQTMLFSATMPKQMEELSRAYLDNPRRVQVAPPGKAADKITQSIHFVEKPGKPGKLREIL
SRDEDALTLVFARTKHGAEKLMKGLVADGYNAASIHGNKSQGQRDRAIKAFRAGEITTLV
ATDVAARGIDIPGVAYVVNYDLPEVPDNYVHRIGRTARAGREGEAIAFCAAEEVDLLNQI
EKLMKIQIPVASGDRPEPVKADKPRRRGGGGGDGRNRKGLGKGSGQRFDKPAQGTGNPVG
SGVAARPEQTQRGAHRRPFLHPVLSRAQR
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
ttgttcgatttcgacatgctcgggctgaagcccgtgcttctcttggccctcaagaaacag
ggcttcgacacccccaccccgatccagaaccaggcgatccccctggccatggatgcgcat
gacatccttggcctggcgcagaccggcaccggcaagaccatggccttcggcctgccgctg
gtggaccacctgctggatcagcccggcaaacccgcccccaagaccgccaaggcgctgatc
cttgcgcccacgcgcgagttggtgaaccagatcgccgacagcctgcgcctgttgacgcat
gatacgccgctgaaggtcacgaccgtggtcggcggacagtccatcggccggcagatcagc
gtgttgtcgcgcggcaccgatatcctggtggccacccccggccgcctgatcgacctgatg
gatcgcggggcggtttccctgcacaccgtgcgccatctcgtgctggacgaggccgaccag
atgctggacctcggcttcatccacgcgctgcgcaagatcgcgccgcaactgggcacgccg
cgccagaccatgctgttctcggccacgatgccgaaacagatggaagagctgtcgcgcgcc
tatctcgacaatccgcgacgggtgcaggtcgccccgccgggcaaggccgccgacaagatt
acgcagtcgatccatttcgtggaaaagcctggcaaaccgggcaagctgcgcgaaatcctg
tcgcgggacgaggatgccctgacgctggtcttcgcccgcaccaagcatggcgcggaaaag
ctgatgaagggcttggtggccgatggctacaacgccgcctcgatccacggcaacaaaagc
caggggcagcgcgaccgcgccatcaaggcgttccgcgctggtgagatcacgacgctggtg
gccaccgacgtcgcagcgcgcggcatcgacattcctggtgtcgcctatgtcgtgaactat
gacctgcccgaggtgccggacaattacgtgcatcgcatcggccgtaccgcccgcgcgggc
cgcgagggcgaggccatcgccttttgtgcggccgaagaggtcgatctgctgaaccagatc
gaaaagctgatgaagatccagatccccgtggccagcggcgatcgtcccgagccggtcaag
gcagacaagccgcgtcgtcgcggtggtggcggcggcgacggtcgcaatcgcaaaggtctg
ggcaaaggcagcgggcagcggttcgacaagcccgcgcagggcaccggcaaccccgtcggc
agcggcgtcgccgcgcggcctgagcagacccaaaggggcgcccatcggcgcccctttctt
catccggtgctgtcacgcgcccaaagatag
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