Roseicyclus elongatus: roselon_01544
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Entry
roselon_01544 CDS
T03060
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
red
Roseicyclus elongatus
Pathway
red03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
red00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
roselon_01544
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
red03021
]
roselon_01544
03400 DNA repair and recombination proteins [BR:
red03400
]
roselon_01544
Enzymes [BR:
red01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
roselon_01544
Transcription machinery [BR:
red03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
roselon_01544
DNA repair and recombination proteins [BR:
red03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
roselon_01544
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
BSH_YknX
BSH_RND
RPOC_hybrid
DUF7567
Motif
Other DBs
NCBI-ProteinID:
AHM03926
UniProt:
W8S561
LinkDB
All DBs
Position
1517639..1521844
Genome browser
AA seq
1401 aa
AA seq
DB search
MNQELTNNPFNPLTPPKAFDEIKVSLASPERILSWSYGEIKKPETINYRTFKPERDGLFC
ARIFGPTKDYECLCGKYKRMKYRGVVCEKCGVEVTLQKVRRERMGHIELASPVAHIWFLK
SLPSRIGLMLDMTLRDLERVLYFENYVVIEPGLTDLTYGQMMTEEEFMDAQDAYGADAFQ
ANIGAEAIREMLANIDLEAEAAQLREDLKEATGELKPKKIIKRLKIVENFLESGNRPEWM
VMTVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKR
MLQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNVLSPANGAPIIVPSQDMILGLYYVTLEREGMKGEGMIFADVEEVRHAL
DAGEVHLHSKVKARVRQIDEEGNEVFQRFDTTPGRVLLGDLLPLNAKAPFDLVNRLLRKK
EVQQVIDTVYRYCGQKESVIFCDQIMTMGFREAFKAGISFGKDDMVIPDTKWTLVDETRE
QVKEFEQQYMDGLITQGEKYNKVIDAWSKANDKVTDAMMATISSAKRDENDAEMEPNSVY
MMAHSGARGSVTQMKQLGGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGL
SDTALKTANSGYLTRRLVDVAQDCIVRMNDCGTENTITAKPAVNDGEVVASLAERILGRT
AGEDVMVPGTDEVICAKGELIDERKADAIEQAGVLEIAIRSPLTCEAEEGVCATCYGRDL
ARGTKVNVGEAVGIIAAQSIGEPGTQLTMRTFHIGGVAQGGQQSFQEANVEGTVDFANPN
LLENTAGEQIVMGRNMQLVVKDDQGAERASFKLGYGTKVMVKDGQKVARGDRLFEWDPYT
LPIIAEKAGTAKFVDLVSGVSIREDTDDATGMTQKIVSDWRTAPKGNELKPEILIVGEDG
EPVRNDAGNPVTYPMSVDAILSIEDGQKVEAGDVVARIPREGAKTKDITGGLPRVAELFE
ARRPKDHAIIAELDGYVKFGRDFKNKRRIGIVPADDSLEPVEYMVPKGKHIPVAEGDFVQ
KGDYIMDGNPAPHDILRIMGVEALADYLIDEVQDVYRLQGVKINDKHIEVIVRQMLQKWE
ILDSGETTLLKGEHVDKAEFDAMNEKAIADGRRPAEGEPILLGITKASLQTRSFISAASF
QETTRVLTEASVQGKRDKLVGLKENVIVGRLIPAGTGGATQRVERIAKSRDSDVIEAARA
EAEAAAALAAPEQDEAGDAAE
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaactcaccaacaacccgttcaacccgctgaccccgcccaaggccttcgac
gagatcaaggtgtcgctggccagccccgagcgcatcctcagctggtcctacggcgagatc
aagaagcccgagacgatcaactaccgcacgttcaagcccgagcgtgacggcctgttctgt
gcgcgcatctttggcccgaccaaggattacgaatgcctctgcggcaagtacaagcgcatg
aagtatcgcggcgtcgtctgcgagaaatgcggcgtcgaggtgacgctgcaaaaggtccgc
cgcgagcggatgggccatatcgagctggcctcgcccgtggcgcatatctggttcctcaag
tcgctgccctcgcgcatcggcctgatgctggacatgacactgcgcgacctcgagcgcgtg
ctgtatttcgaaaactacgtggtgatcgagccgggcctgaccgacctcacctacggtcag
atgatgaccgaggaagagttcatggatgcgcaggacgcctatggcgccgacgcgttccag
gccaatatcggcgccgaggccatccgcgagatgctggccaatatcgacctcgaggccgag
gccgcgcaactgcgcgaggacctcaaggaagccacgggcgagttgaagcccaagaagatc
atcaagcgcctcaagatcgtggagaacttcctcgagtcgggcaaccgccccgaatggatg
gtcatgacggtcattccggtcatcccgccggaactgcgcccgctggtgccgctggatggt
ggccgctttgcgacctcggacctgaacgacctgtatcggcgggtgatcaaccgcaacaac
cgcctcaagcgcctgatcgagctgcgcgcgcccgacatcatcatccgcaacgaaaagcgg
atgttgcaggaatcggtcgatgctctgttcgacaacggccgccgcggccgcgtgatcacg
ggggccaacaagcgcccgctgaaatcgctctcggacatgctcaagggcaagcagggccgc
ttccgccagaaccttctgggcaagcgcgtcgacttctcgggccgctcggtcatcgtgacc
ggtccggagttgaaactgcaccagtgcggcttgcccaagaagatggcgctggagctgttc
aagccgttcatctactcgcggctcgaggccaagggcctgtcctcgaccgtcaagcaggcg
aagaagctggtcgagaaggaacgccccgaggtgtgggatatcctcgacgaggtgatccgc
gaacaccccgttatgctgaaccgtgcgccgacgctgcaccgcctgggcatccaggcgttc
gagcccgttctgatcgaaggcaaggcgatccagctgcacccgctggtctgttcggccttc
aacgccgacttcgacggtgaccagatggccgtacacgtccccctctcgctggaagcccag
ctcgaggcccgtgtgctgatgatgtcgacgaacaacgtgctgtcgcccgccaacggtgcg
ccgatcatcgtgccgtcgcaggacatgatccttggcctgtactacgtgaccctcgaacgt
gaaggcatgaagggcgagggcatgatcttcgccgatgtcgaggaggtgcgccacgcgctc
gacgctggcgaggttcacctgcactcgaaggtcaaggcgcgcgtgcgtcagatcgacgaa
gaaggcaacgaggtgttccaacgcttcgacacgacccccggtcgcgttttgctgggcgat
ctgctgccgctgaatgccaaggcacccttcgatctggtcaaccgcctgctgcgcaagaaa
gaggtgcagcaggtcatcgacaccgtctaccgttattgcggtcagaaggagtcggtcatc
ttctgcgaccagatcatgacgatgggcttccgcgaggcgttcaaggccggcatttccttc
ggcaaggatgacatggtcatccccgacaccaagtggacgctggtcgacgagacccgcgaa
caggtcaaggaattcgaacagcagtacatggatggcctgatcacccagggtgagaagtac
aacaaggtcatcgatgcctggtcgaaagccaacgacaaggtgacggatgccatgatggcc
accatctcgtcggccaagcgcgacgagaacgacgccgagatggaaccgaactcggtctac
atgatggcccattcgggtgcgcgtggttcggtcacgcagatgaagcaactgggcgggatg
cgcggcctgatggccaaaccctcgggcgagatcatcgagacgccgatcatctcgaacttc
aaggaaggtctgaccgtgctggagtacttcaactccacccacggtgcgcgcaagggtctg
tcggacaccgcgctcaagaccgcgaactcgggctacctgacccgtcgtctggtggacgtg
gcgcaggattgcatcgtgcgcatgaacgattgcgggaccgagaacacgatcaccgccaag
cccgccgtcaatgacggcgaggtcgtggcctcgcttgccgagcgtatccttggccggacc
gccggcgaggacgtgatggtgccgggcaccgacgaggtgatctgcgccaagggtgaattg
atcgacgaacgcaaggccgacgcgatcgagcaggccggtgtgcttgagatcgcgatccgc
agcccgctgacctgcgaggcagaggaaggcgtctgcgccacctgctacgggcgtgacctg
gcgcgcggcaccaaggtgaatgtcggcgaggccgtcggcatcatcgcggcgcagtcgatc
ggcgagccgggcacgcagctgacgatgcggaccttccacatcggcggcgttgcgcagggt
ggtcaacagtccttccaggaggccaacgtcgaaggcacggtcgatttcgccaacccgaac
ctgctggaaaacacggctggcgagcagatcgtgatgggccgcaacatgcaactggtggtc
aaggacgatcagggcgccgagcgggccagcttcaagctgggctacggcaccaaggtgatg
gtcaaggacggccagaaggtcgcccgcggcgaccgcctgttcgaatgggatccctacacc
ctgccgatcatcgccgaaaaggcggggacggcgaaattcgtcgatctcgtctcgggcgtg
tcgatccgcgaggataccgatgacgcaaccggcatgacgcaaaagatcgtctcggactgg
cgcacggcgcccaagggcaacgagctcaagcccgagatcctgatcgtcggcgaagatggc
gaaccggtccgcaacgatgcgggcaacccggtgacctatccgatgtcggtggatgcgatc
ctgtccatcgaggatggccagaaggtcgaagccggcgacgtggtcgcccgtatcccgcgc
gaaggcgccaagacaaaggacatcaccggcggtctgccgcgtgtggccgaactgttcgag
gcgcgccgtccgaaagatcacgcaatcatcgccgagctcgatggctacgtgaaattcggc
cgcgacttcaaaaacaagcgtcgcatcggcatcgttcccgccgacgacagcctggagccc
gtggaatacatggtgcccaagggcaagcacatcccggtggccgagggcgatttcgtccag
aagggcgactacatcatggatggcaacccggcgccgcatgacattctgcggatcatgggg
gtcgaggcgctggccgattacctcatcgacgaggtgcaggacgtctatcgcctgcagggt
gtgaagatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcaaaagtgggag
atcctcgactccggcgagaccacgctactcaagggcgagcatgtcgataaggccgagttc
gacgcgatgaacgaaaaggccatcgccgacgggcgccgccccgccgaaggcgagccgatc
ctcctcggcatcaccaaggcctcgctgcagacccggtccttcatctcggccgcgtccttc
caggagaccacgcgcgtgctgaccgaagcctcggttcagggcaagcgggacaagctggtc
ggcctgaaggaaaacgtcatcgtgggtcgtctgatcccggccgggaccggcggcgcaacc
cagcgggtcgagcgcatcgccaagtcgcgcgactccgacgtgatcgaagccgcccgggcc
gaggccgaagcggccgcagccctggccgcccccgagcaggacgaggccggcgacgccgcc
gagtga
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integrated database retrieval system
