Roseicyclus elongatus: roselon_01788
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Entry
roselon_01788 CDS
T03060
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
red
Roseicyclus elongatus
Pathway
red02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
red00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
roselon_01788
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
red03021
]
roselon_01788
Transcription machinery [BR:
red03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
roselon_01788
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Med21
FTCD_C
Motif
Other DBs
NCBI-ProteinID:
AHM04154
UniProt:
W8RSI4
LinkDB
All DBs
Position
complement(1729422..1731410)
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AA seq
662 aa
AA seq
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MAKDTDDRKAEGDEPEIGLDMSQAAVKKMIAEAKARGYITYDQLNTVLPPEQVSSEQIED
VMSMLSEMGINVIEDEEAEDTDEQKESTDVVETSTSREVAVAQTETEKLDRTDDPVRMYL
REMGSVELLSREGEIAIAKRIEAGRNTMIAGLCESPLTFQAITIWRDELLDEDILLRDVI
DLDATFGNQLDDEEDSAPVVETLTPGAAPKPEAKSDQPELDADGNPIAKDDDDDEDEQAN
MSLAAMEAALKPRVLETLDRIADDYARLAEMQDLRISATLNEDASFSTDDEAEYQQLRSE
IVELVNELHLHNNRIEALIDQLYGINRRIMSIDSAMVKLADQARINRREFIEEYRGSELD
PSWVDRMTGKSGRGWQALMDRSRPKVEELRADMAQVGTYVGLDIQEFRRIVAQVQKGEKE
ARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYA
TWWIRQAITRSIADQARTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPL
EKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRVLASL
TPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFL
DQ
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atggccaaagacaccgacgatcgaaaggcggaaggcgacgagcccgaaatcggactcgac
atgagccaggccgccgtcaagaaaatgatcgccgaggccaaggcgcgcggatacatcacc
tacgaccaactcaacaccgttctgccgcccgaacaggtcagctcggagcagatcgaggac
gtgatgtcgatgctcagcgagatgggcatcaacgtcatcgaggatgaggaagccgaagac
accgacgagcaaaaggaatcgaccgacgtggtcgagacctcgacctcgcgcgaggtggcc
gtcgcccagaccgagaccgagaaactcgaccgtaccgacgaccccgtgcgcatgtacctg
cgcgagatgggcagcgtcgagttgctgagccgcgagggcgagatcgcaatcgccaaacgc
atcgaagccggccgcaacacgatgatcgccggtctgtgcgagtcgcccctgacctttcag
gcgatcacgatctggcgcgacgaattgctggacgaggacatcctgctgcgcgatgtgatc
gacctggacgcgactttcggcaaccagctggacgatgaggaggatagcgcccccgtcgtc
gaaaccctgacccccggcgccgcgcccaagcccgaagccaagagcgatcagcccgaactg
gacgccgacggcaatccgattgccaaggacgacgacgacgacgaggacgagcaggccaat
atgagccttgccgcgatggaggccgcgctgaagccgcgcgtgctggaaaccctcgaccgt
atcgccgatgattacgcgcgtctggcggaaatgcaggatttgcgcatctcggccaccttg
aacgaggatgccagcttttccaccgatgacgaggccgagtatcagcaactgcgctcggaa
atcgtcgagctggtgaacgagcttcacctgcacaacaaccgcatcgaggcgctgatcgac
cagctatacggcatcaaccgccgcatcatgtcgatcgacagcgcgatggtgaaactggct
gatcaggcccgcatcaaccgccgcgaattcatcgaggaatatcgcgggtccgagctggac
ccgtcgtgggtggaccgcatgacgggcaagtcgggccggggctggcaggccctgatggac
cgttcgcgccccaaggtcgaagagctgcgcgccgacatggcgcaggtcggcacctatgtg
gggctcgacatccaggaattccgccgcatcgtggcgcaggtccagaagggcgagaaagag
gcccgtcaggccaagaaggaaatggtcgaggcgaacctgcgcctcgtgatctccatcgcc
aagaaatacaccaaccgtgggctgcaattcctcgacctgatccaggaggggaacatcggc
ctgatgaaggctgtggacaagttcgaataccgccgcggctacaagttctcgacctacgcg
acctggtggatccggcaggccatcacgcggtccatcgcggatcaggcccgcacgatccgc
atcccggttcatatgatcgagacgatcaacaagctggtgcgcaccggccgccagatgctg
cacgagatcggccgcgagccgacgcccgaggaactggccgaaaagctgcagatgccgctg
gaaaaggttcgcaaggtgatgaagatcgccaaggagccgatttcgctggagacgcccatc
ggcgacgaggaagacagccagcttggcgatttcatcgaggacaagaatgccgtcctgccg
ctggattccgccattcaggaaaacctcaaggaaaccacgacccgcgttctggcctcgctc
accccgcgcgaggaacgcgtgctgcgcatgcgtttcggcatcgggatgaacaccgaccat
acgctggaagaggtcggccagcagttcagcgtgacccgcgaacgcatccgccagatcgag
gcgaaggcgctgcgcaagctgaagcaccccagccgaagccggaaactgcggagcttcctc
gatcagtga
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