Roseicyclus elongatus: roselon_02582
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Entry
roselon_02582 CDS
T03060
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
red
Roseicyclus elongatus
Pathway
red03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
red00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
roselon_02582
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
red03019
]
roselon_02582
03009 Ribosome biogenesis [BR:
red03009
]
roselon_02582
Enzymes [BR:
red01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
roselon_02582
Messenger RNA biogenesis [BR:
red03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
roselon_02582
Ribosome biogenesis [BR:
red03009
]
Prokaryotic type
rRNA processing factors
roselon_02582
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
S1
Motif
Other DBs
NCBI-ProteinID:
AHM04900
UniProt:
W8SQW1
LinkDB
All DBs
Position
2473828..2475654
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AA seq
608 aa
AA seq
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MAKKMLIDATHPEETRVVVVDGTKVEEFDFESLSKRQLAGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYYQIPVADREALLAEEREYAEAMAAEADEEQKPKRRRTRRKKT
TDKPEADGTAPETMAARHDSDAVTSAPAGMDVVDLTETEDEAGPVEGFRQDDGGSATAPA
DAPAKANTDAPVEDQAAPVDDTAEDTSSEAVSDTEDTVESGVSEDDADTGDDVEDGDDSD
DDAAEADEADGTDDSDAETVADDDTEDDIRPVRKPRPRKYKIQEVIKVRQIMLVQVVKEE
RGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNAADRKKLKETAQSLDVPQGAGLI
IRTAGAKRTKAEIKRDYEYLQRQWEQVRELTLKSVAPAPIYEEGNLIHRVIRDLYSREID
EVLVEGDAGYRQAKDFMKMIMPSHAKNVKHYADPMPLFARFKVEGYLADMFNPVVQLKSG
GYIVIGVTEALVAIDVNSGRATKEGSIEETALKTNLEAAEEVARQLRLRDLAGLIVIDFI
DMDERRNNAAVEKRIKDKLKTDRARIQVGRISTFGLLEMSRQRLRPGMLEATTHALPPLP
WHGHPALR
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagaagatgctcatcgatgccacccatcccgaggaaacacgggttgtcgtggtt
gatggaaccaaagtcgaagaattcgatttcgagtcgctgagcaagcggcaactggcagga
aacatttatctggcaaaggtcacgcgggtcgaaccctcgcttcaggccgcatttgtcgat
tacggcggcaaccgccacgggttcctcgccttttcggaaatccatcccgattactaccag
atcccggtcgccgaccgcgaggcgctgctggccgaggaacgcgaatacgccgaggcgatg
gccgccgaggccgatgaggagcaaaaacccaaacgccgccgcacccgtcgcaagaagacg
acggacaagcccgaggccgacggaaccgcgcccgagacgatggccgcacggcacgacagc
gacgcggtcacaagcgcgccggccggcatggacgtggtcgatctgaccgagaccgaggac
gaggccggcccggtcgagggcttccgtcaggatgacggcggctcggcgaccgcgcccgcg
gacgcccccgcaaaggccaacaccgacgcgccggtcgaggatcaggcagccccggtggac
gacaccgccgaggatacgtcgtcagaggcggtctccgacaccgaagacacagtcgaaagc
ggcgtgtccgaagacgacgctgacacgggcgacgatgtcgaagacggtgacgacagtgac
gatgacgctgccgaggccgacgaggccgatggcaccgatgacagcgacgcggaaactgtc
gcggatgacgacaccgaggacgacatccgcccggtgcgcaagccgcgcccgcgcaaatac
aagatccaggaggtcatcaaggtccgccagatcatgctggtgcaggtcgtcaaggaggag
cgcggcaacaagggcgctgcgctgaccacctatctgtcgttggcggggcgctattgcgtt
ctgatgcccaacaccgcccgtggcgggggcatcagccgcaagatcaccaatgccgccgac
cgcaagaagctcaaggaaaccgcgcagtcgctggacgtgccgcagggcgcgggcctgatc
atccgcacggcgggcgccaagcgcaccaaggccgagatcaagcgcgattacgaatacctg
caacgccagtgggaacaagtccgcgaactgacgcttaaatcggtcgcgcccgccccgatc
tacgaagagggcaacctgatccaccgcgtgatccgcgatctctacagccgcgagatcgac
gaggtgctggtcgagggggatgccggataccggcaggccaaggacttcatgaagatgatc
atgccgtcccacgccaagaacgtgaagcactacgccgatccgatgccgctgtttgcgcgc
ttcaaggtcgagggctatctcgccgacatgttcaacccggtggtacagctgaaatcgggt
ggctacatcgtgatcggcgtgaccgaggcgctggtggcgatcgacgtgaactcggggcgg
gccaccaaggaaggctcgatcgaggaaaccgcgctcaagaccaatctcgaagctgccgaa
gaggtggcgcgccagttgcgtctgcgcgaccttgccggcctgatcgtgatcgacttcatc
gacatggacgagcggcgcaacaacgccgcggtcgaaaagcgcatcaaggacaagctcaag
accgatcgcgcccgcatccaggtgggccggatctcgaccttcggtttgctggagatgtcg
cgccagcgtttgcgccccggtatgctcgaggcgaccacccacgccctgcccccattgcca
tggcacgggcatccagcgctccgatga
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