Klebsiella electrica: electrica_03140
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Entry
electrica_03140 CDS
T06174
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ree
Klebsiella electrica
Pathway
ree03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ree00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
electrica_03140 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ree03400
]
electrica_03140 (mfd)
Enzymes [BR:
ree01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
electrica_03140 (mfd)
DNA repair and recombination proteins [BR:
ree03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
electrica_03140 (mfd)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QDI09237
LinkDB
All DBs
Position
3236018..3239533
Genome browser
AA seq
1171 aa
AA seq
DB search
MSRNSKYLGYTYRANQEGILITAMPQQYRYTLPVKPGEQRHLGELTGAACATLVAEMAER
HGGPVILVAPDMQNALRLNDEVRQFTDSMVTGLADWETLPYDSFSPHQDIISSRLATLYQ
LPTMQRGVLIVPVSTLMQRVCPHNFLHGHALVMKKGQRLSRDGLRTQLDSAGYRHVDQVM
EHGEYATRGALLDLFPMGSEQPYRLDFFDDEIDSLRLFDVDSQRTLEEVAAINLLPAHEF
PTDQAAIELFRSQWRDRFEVKRDAEHIYQQVSKGTLPTGIEYWQPLFFNEPLPPLFSYFP
ANALIVNTGDLEASAGRFQNETRARFESRGVDPMRPLLPPEQLWLRSDELFSELKKWPRI
QLKTERLADKAANTNLGYQKLPDLSVQAQNKAPLDNLRRFLEAFSGPVIFSVESEGRREA
LGEVLARIKIAPKHILRLEEATGSGRYLMIGAAEHGFIDSPRNLALICESDLLGERVARR
RQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYANDA
RLYVPVSSLHLISRYAGGAEESAPLHKLGGDAWARARQKAAEKVRDVAAELLDIYAQRAA
KAGFAFKYDREQYQLFCDGFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEV
AMRAAFLAVENHKQVAVLVPTTLLAQQHFDNFCDRFANWPVRIEMLSRFRSAKEQAQILE
QAAEGKIDILIGTHKLLQSEVKLRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTAT
PIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLVVREAILREVLRGGQVYYLYN
DVENIQKAADRLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDI
PTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTSDAQKRLEAIASLE
DLGAGFALATHDLEIRGAGELLGEDQSGQMTTIGFSLYMELLENAVDALKAGREPSLEDL
TSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRVASARNEHSLEEIKVELIDRFGTLPDAA
RNLLDIARLRQQAQKLGIRKLESNDKGGVIEFNEKNNVNPVWLIGLLQKQPQHFRLDGPT
RLKFMQELGERKTRMEWVRQFMRQLEENATA
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
ttgagccgcaactcgaaatatttagggtacacatatagagcgaatcaagaagggatcctg
ataacagctatgcctcaacaataccgatacacactgccggtcaagcccggcgaacagcgg
catctcggtgaattaaccggcgcggcttgtgccacgttggttgcggaaatggccgagcgc
cacggcgggccggtcatactcgtcgcccccgatatgcaaaatgccctgcgtctgaatgat
gaagttcgccagtttaccgacagcatggtgacaggactggctgactgggaaacgctacct
tacgatagcttctcgccgcatcaggacattatctcttcccgtctcgccacgctttatcaa
ttacccaccatgcagcgcggcgtgctgatcgtgccggtcagcacgttaatgcagcgcgtc
tgtccgcataatttcctccacggacacgcgctggtgatgaaaaaaggccagcgtctgtcg
cgcgacggcctgcgcactcagttagatagcgccggctatcgccatgtcgatcaggtgatg
gagcacggggagtatgctacccgcggcgccctgcttgacctgttcccgatggggagcgag
caaccctatcgcctcgacttcttcgatgatgaaatcgacagcctgcgcctgttcgacgtc
gacagccagcgtacgctggaagaggtggccgccattaatctactgcccgctcatgagttc
ccgaccgatcaggcggcgattgagctgttccgtagccagtggcgcgatcgctttgaagtc
aaacgcgacgccgaacatatctatcagcaggtcagcaaagggacattaccgaccggcatc
gaatactggcagccgctgtttttcaatgagcctctgccgccgctgttcagctacttcccg
gcgaacgccctgatcgtcaataccggcgatctggaagccagcgccgggcgttttcaaaac
gaaacccgcgcccgcttcgaaagccgcggcgtcgacccgatgcgtcccctgctgccgccg
gaacagctctggctgcggagcgacgaactgttcagcgagctgaaaaaatggccgcgtatc
cagttaaaaacggagcgtctggccgataaagccgccaatactaacctcggctatcagaag
ctgccggacctctctgttcaggcgcaaaacaaagcgccgctggataatctgcgccgcttc
ctcgaagcctttagcggcccggtgattttctcagtggagagcgaaggtcgccgcgaagcg
ctgggcgaagtgctggcgcggatcaaaatcgcgccgaaacatattctgcggctggaagag
gccaccggcagcggccgctatttaatgataggcgccgccgaacacgggtttatcgatagc
ccgcggaatctggcgctgatttgcgaaagcgacctgttgggcgagcgcgtggcgcgtcgt
cgccaggattcgcgacgcaccattaaccccgataccttaatccgcaacctggcggaactg
catatcggccagccggtggtacatctggagcatggcgttggccgttatgccggcatgacc
acgctggaggcaggcggcatcaaaggggaatacctgatgctgacctacgccaatgacgcc
agactgtatgtgccggtgtcatcattgcacctgatcagccgctatgccggcggcgcggaa
gagagcgcaccgctgcataaactcggtggcgatgcctgggcgcgcgcgcggcagaaggcg
gcggaaaaagtgcgcgatgtggcggcggaactgctcgatatttacgcccagcgcgcggcg
aaagcgggcttcgcctttaagtacgaccgcgagcagtatcagctgttctgcgatggtttc
ccgtttgaaaccacgccggatcaggcgcaggcgattaacgccgttctcagcgacatgtgt
caaccgctggctatggaccgcctggtctgtggcgacgtcggcttcggtaaaactgaagtg
gcgatgcgtgccgcctttctggcggtggagaaccacaagcaggtcgcggtgctggtgccg
accactctgctcgcgcagcagcacttcgataacttctgcgaccgcttcgccaactggccg
gtgcgcattgaaatgctgtcgcgctttcgcagcgcgaaagagcaggcgcagattcttgaa
caggctgccgaaggtaaaatcgatattcttatcggcacgcacaagctgctgcaaagcgaa
gttaagctgcgcgaccttgggctgctgatcgtcgatgaagagcaccgcttcggggttcgc
cacaaagagcgaatcaaagcgatgcgtgccgatgtcgatattctgacgctgaccgccacg
ccgattccgcgaacgctgaacatggccatgagcggtatgcgggatctgtctattattgcc
acgccgcccgcccgccgcctggcggtaaaaaccttcgtccgggagtatgactcgctggtg
gttcgcgaggcgattctgcgtgaagtgctgcgcggcggccaggtctactacctttataac
gacgtggagaatatccagaaagcggcggatcggctcgcggagctggtgccggaggcgcga
atcgccatcggtcacgggcagatgcgcgagcgcgagctggaacgggtgatgaatgatttc
caccaccagcgttttaacgtgctggtctgcaccactattattgagaccgggattgatatc
ccgaccgccaataccattatcatcgagcgcgcggaccatttcggtctggctcaattgcac
cagctgcgcggacgcgtcggccgttcgcatcatcaggcctatgcctggctgctgacgccg
cacccgaaagcgatgaccagcgatgcgcaaaagcgtctggaagccatcgcctcgctggag
gatctcggcgccggtttcgcgctggccacgcacgacctggagatccgcggcgctggcgag
ctgctgggcgaagatcagagcgggcagatgaccaccatcggtttttcgctatatatggag
cttctggagaacgctgtcgatgcgctgaaagccggacgtgagccttcacttgaggatctg
accagccagcagactgaggttgaactgcggatgccttcgctgttgccggacgactttatt
cctgatgtgaatacccgactctcgttctacaagcgggttgccagcgccaggaatgagcac
agtctggaagagattaaagtcgaactgatcgaccgcttcggcacgctaccggatgcggcg
agaaacctgctggatatcgcccgtctgcgtcaacaggcgcagaagctggggatccgtaag
ctggagagcaatgacaaaggcggcgtgattgagttcaatgaaaagaacaacgtcaacccg
gtgtggctgattggcctgctgcaaaaacagcctcagcacttccgcctggatggcccgacg
cggctgaagttcatgcaggaacttggcgaacgtaaaacgcgtatggagtgggttcgccag
tttatgcggcagttagaagagaacgcgaccgcataa
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integrated database retrieval system
