Cupriavidus necator H16: H16_A2342
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Entry
H16_A2342 CDS
T00416
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
reh
Cupriavidus necator H16
Brite
KEGG Orthology (KO) [BR:
reh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
reh03019
]
H16_A2342 (hrpA)
Enzymes [BR:
reh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
H16_A2342 (hrpA)
Messenger RNA biogenesis [BR:
reh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
H16_A2342 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_19
AAA_22
acVLRF1
T2SSE
nSTAND3
NACHT
Ssl1
Motif
Other DBs
NCBI-ProteinID:
CAJ93438
UniProt:
Q0K983
LinkDB
All DBs
Position
1:complement(2541941..2545978)
Genome browser
AA seq
1345 aa
AA seq
DB search
MSEQRPVKPKPPAAPRQRAGAAQPASPTQPRPAPGPARKPDVRAQPAAARPAGEAGQRPP
RGPREARAPRAPRPVNPLPPITFPEALPVSGRRDEIAAALLANQVVIVSGETGSGKTTQL
PKICLSIGRGPGREGGGLIGHTQPRRIAATSTAKRIAQEIGTPLGEHVGYQVRFNDTMSS
GASVKLMTDGILLAETQNDPLLRAYDTLIIDEAHERSLNIDFLIGYLRQILPKRPDLKVI
ITSATIDAQRFAQHFASGDKPAPVIEVSGRLYPVEVRYRPITEDVPAGAPRSPQARERDL
YDGIVEAVDEVCRVGPGDVLVFLPGEREIREAAEALRKHHPPHTEILPLFARLSVQEQER
VFKPSNARRIVLATNVAETSLTVPGIRYVVDTGLARVKRYSYRNKVEQLQVESISQAAAN
QRAGRCGRVANGVCIRLYEESDFAGRPRFTDPEILRSSLAAVILRMKALRLTEIESFPFI
EPPLGRAVADGYQLLQELGAVDDANQLTGTGRQLAKLPLDPRVARMILAAREHHCLREVL
VIASALSVQDPRDRPQEAQEAADQAHRKFMDEKSEFLGWVRLWKWFEDAVAHKKSNRQLQ
DQCRAHFLSHLRLREWRDVHSQLLTTVTEQGWRLNDSEPTYEQVHKALLTGLLGNVGCRI
EDGDGKGREYLGARGIKFHLWPGSLIARKVGRWIVAAELVETSRLFARTLARIEPEWLEQ
VGRHLLKVSWSDPHWEKKAGQVLALERATLYGLVVYQHRRVHYGPMNPQEAREIFIRRAL
VEGEFDTRLPFYAHNQRLVREIENLEHKSRRQDVLVDDELIYAFYDRAIPADICQQASFE
QWYQAESGKDRKLLYLNRDELMRHEAAGITTDLFPKAMNVAGVDMGLTYHFEPGSHRDGV
TLTVPLYALNQVRQERADWLVPGMIKEKVHLLLKSLPQKLRRHCVPLPEYAAAFVARQPL
GEGELLDVLIADIREQTGTMVKRADFKLETLPAHHTMNFKVVDEHGRQLEMGRNLAQLRA
ELGGQAQQSFQRVAAQAAAQAATQAPEQAAPLAAAEPGKYEGLTGWTFGELPELLEIRKG
SQTLFGYPALVDRGTHCDVEVFDDPQEAARVHHLGLRRLFALQLREQVKFIEKNIPGLQQ
MAMQYMTLGTQEMLREQVVMLALERACMQAPLPRNEAEFNARKDEGRTRLSLLAQEIARL
VGTILAEYAGLPRKLLQAKPFAGPHADMEAQLGRLMGKRFVDETPYTQLVHFPRYLKGIA
MRVDKLKGDPARDTQRTQEMAPLVQQWQRAEKQLRTQGRGGEDARLEEFRWMLEELRIAL
FAQELRTPVPMSVKRLQKVWESMQR
NT seq
4038 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaacaacgccccgtcaagcctaaaccacccgccgcgccgcgccagcgcgccggt
gccgctcagccagcctccccaacccagccccggccggccccaggcccggccaggaagccg
gacgtccgtgcgcagccagccgctgcccggccggccggtgaagccgggcagcgcccgcca
cgcggtccccgcgaggcgcgtgcgccgcgtgcgccaaggccggtcaacccgctgccgccc
atcaccttcccggaggccctgccggtctccggccgccgcgacgagatcgccgcggcgctg
ctggccaaccaagtggtgatcgtctcgggcgagaccggctcgggcaagaccacccagctg
cccaagatctgcctgtcgatcgggcgcggcccggggcgcgagggtggggggctgatcggc
cacacccagccgcggcgcatcgccgccacctcgaccgccaaacgcattgcgcaggagatc
ggcacgccgctgggcgagcacgtgggctaccaggtgcgtttcaacgacaccatgtcgtcg
ggggcgtcggtcaagctgatgaccgacggcatcctgctggccgagactcagaacgatccg
ctgctgcgcgcctacgacacgctgatcatcgatgaggcgcacgagcgcagcctgaacatc
gacttcctgatcggctacctgcgccagatcctgccgaagcgcccggacctgaaggtgatc
atcacctcggccaccatcgatgcccagcgctttgcccagcatttcgcctcgggcgacaag
ccggcgccggtgatcgaggtcagcggccgcctgtacccggtggaagtgcgctaccgtccg
atcaccgaggacgtgcccgcgggcgcgccgcgcagcccgcaggcgcgcgagcgcgacctg
tacgacggcattgtcgaggcggtcgacgaggtgtgccgcgtcggcccgggcgatgtgctg
gtgttcctgcccggcgagcgcgagatccgcgaagccgccgaggcgctgcgcaagcaccac
ccgccgcataccgagatcctgccgctgtttgcgcggctgtcggtgcaggagcaggagcgg
gtgttcaagccgtccaacgcgcggcgcatcgtgctggcgaccaacgtcgccgaaacctcg
ctgacggtgccgggcatccgctacgtggtcgataccgggctggcgcgggtcaagcgctac
tcgtaccgcaacaaggtcgagcaactgcaggtcgagtcgatctcgcaggccgctgccaac
cagcgcgctggccgttgcggccgggttgccaacggcgtgtgcatccggctgtatgaggag
tccgatttcgccggccggccgcgctttaccgaccccgagatcctgcgctcgtcgctggcc
gcggtgatcctgcgcatgaaggcgctgcggctgaccgagatcgagtcgttcccgtttatc
gagccgccgctgggccgcgccgttgccgacggctaccagctgctgcaggaactgggcgcg
gtcgacgacgccaaccagcttaccggcaccgggcgccagctggccaagctgccgctggac
ccgcgcgtggcgcgcatgatcctggccgcgcgcgagcatcactgcctgcgcgaggtgctg
gtcatcgccagcgcgctgtcggtgcaggacccgcgcgaccgcccgcaggaggcgcaggaa
gccgccgaccaggcgcaccgcaagttcatggacgagaagtccgagttcctgggctgggtc
aggctgtggaagtggttcgaggacgcggtcgcgcacaagaagtccaaccgccagctgcag
gaccagtgccgcgcccacttcctgtcgcacctgcggctgcgcgagtggcgcgacgtgcat
tcgcaactgctgaccacggtgaccgagcagggctggcgcctgaacgacagcgagcccacc
tatgagcaggtgcacaaggcgctgctgaccggcctgctgggcaatgtcggctgccgcatc
gaggatggcgacggcaagggccgcgaatacctgggcgcgcgcggcatcaagttccacctg
tggccgggctcgctgatcgcgcgcaaggtcgggcgctggatcgtcgcggccgagctggtc
gagaccagccggctgttcgcgcgcacgctggcgcgcatcgagccggagtggctggaacag
gtgggccgtcacctgctcaaggtcagctggagcgatccgcactgggaaaagaaggcgggc
caggtgctggcgctggagcgcgccacgctgtacgggctggtggtctaccagcaccggcgc
gtgcactacggcccgatgaacccgcaggaagcgcgcgagatctttatccgccgtgcgctg
gtcgagggcgagttcgacacgcgcctgccgttctacgcgcacaaccagcgcctggtgcgc
gagatcgagaacctggagcacaagtcgcgccgccaggacgtgctggtcgacgacgaactg
atctacgccttctacgatcgcgcgattcccgccgacatctgccagcaggccagcttcgag
cagtggtaccaggcagagagcggcaaggaccgcaagctgctgtacctgaaccgcgacgag
ctgatgcggcacgaggcggccggcatcaccaccgacctgttccccaaggccatgaacgtg
gccggggtggacatggggctgacctaccacttcgagccaggcagccaccgcgacggcgtg
accctgaccgtgccgctgtacgcactcaaccaggtgcgccaggagcgtgccgactggctg
gtgccgggcatgatcaaggagaaggtgcacctgctgctcaagtcgctgccgcagaagctg
cgccgccactgcgtgccgctgccggaatatgccgcggcctttgtcgcgcgccagccgctt
ggcgagggcgagctgctggacgtgctgattgccgatatccgcgagcagaccggcaccatg
gtcaagcgcgccgacttcaagctggaaacgctgcccgcgcaccatacgatgaacttcaag
gtggtcgacgagcacggccgccagcttgagatgggccgcaacctggcccagctgcgcgcc
gagctgggcgggcaggcgcagcagtcgttccagcgggtggccgcgcaagccgcggcacag
gcggcaacccaggccccggagcaggcggcgccgctggccgcggccgagcccggcaagtac
gagggactgaccggctggaccttcggtgagctgcccgagctgctggagatccgcaagggc
agccagaccctgttcggctaccccgcgctggtcgatcgcggcacgcactgcgacgtggaa
gtcttcgacgacccgcaggaagccgcccgcgtccaccacctggggctgcgccggctgttt
gcgctgcagctgcgcgagcaggtcaagttcatcgagaagaacatcccgggcctgcagcag
atggcgatgcagtacatgacgctgggcacgcaggagatgctgcgcgaacaggtcgtgatg
ctggcgctggagcgtgcctgcatgcaggcgccgctgccgcgcaacgaggccgagttcaat
gcacgcaaggatgagggccgcacccggctgtcgctgctggcgcaggagatcgcgcggctg
gtggggaccatcctggccgagtacgccggactgccgcgcaagctgctgcaggccaagccg
ttcgccgggccccatgcggacatggaagcgcagctcgggcggctgatgggcaagcgcttt
gtcgacgagaccccatacacgcaactggtccatttcccgcgctacctgaagggcatcgcc
atgcgggtggacaagctcaagggcgacccggcgcgcgacacccagcgcacgcaggagatg
gcgccgctggtgcagcagtggcagcgggccgaaaagcagctgcgcactcagggccgcggc
ggcgaggacgcgcggctggaggaattccgctggatgctggaggagctgcgcatcgcgctg
ttcgcccaggagctgcgcacaccggtgccgatgtcggtcaagcggctgcagaaagtgtgg
gaatcgatgcagcgctga
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