Cupriavidus necator H16: H16_A3496
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Entry
H16_A3496 CDS
T00416
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta prime subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
reh
Cupriavidus necator H16
Pathway
reh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
reh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
H16_A3496 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
reh03021
]
H16_A3496 (rpoC)
03400 DNA repair and recombination proteins [BR:
reh03400
]
H16_A3496 (rpoC)
Enzymes [BR:
reh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
H16_A3496 (rpoC)
Transcription machinery [BR:
reh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
H16_A3496 (rpoC)
DNA repair and recombination proteins [BR:
reh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
H16_A3496 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
CAJ94564
UniProt:
Q0K607
A0AAE5ZFH2
LinkDB
All DBs
Position
1:complement(3765934..3770181)
Genome browser
AA seq
1415 aa
AA seq
DB search
MKALLDLFKQVQQEEQFDAIKIGLASPEKIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELAAPTAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAFVVIEPGMTPLKKSQIMSEDDYLAKCDEYGEGEFVAM
MGAEGIRELLRGIDIEKQIEQIRAELQATGSEAKIKKFAKRLKVLEAFQRSGIKPEWMIL
EVLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRML
QEAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGP
TLKLHQCGLPKLMALELFKPFIFHKLETMGIATTIKAAKKEVESQTPVVWDILEEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQME
ARTLMLASNNVLFPANGDPSIVPSQDVVLGLYYTTRDKINGRGEGMTFADISEVIRAYEN
KEVELASRVNVRITEYELVDKDAEGDARFAPKITLQATTVGRAILSEILPKGLPFSVLNK
PLKKKEISRLINTAFRKCGLRETVIFADKLLQSGFRLATRAGISIAIDDMLVPPQKEKII
AEASAKVKEYDKQYMSGLVTDQERYNNVVDIWGAAGDQVGKAMMEQLQHEDVVDREGKTV
KQESFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFI
STHGARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTSNGVAMKALVEGGEVIEA
LRDRILGRVTVADVVNPETQETAIEAGTLLDEDLVELIDNIGVDEVKVRTPLSCDTRYGL
CGKCYGRDLGRGVLVNSGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKA
TGTVRFTATMRYVTNAKGELIVISRSGEALITDDHGRERERHKIPYGATLLVQDGQAIKA
GTQLATWDALTRPIVSEYTGTTKFENVEEGVTVAKQMDEVTGLSTLVVIDAKRRTAATKG
IRPQVKLLDANGQEVKIPGTDHSVTIGFQVGALITVKDGQQVHVGEVLARIPTESQKTRD
ITGGLPRVAELFEARSPKDAAVLAEVTGTTSFGKDTKGKQRLVITDLDGNAHEFLIAKEK
QVLVHDGQVVNKGEMIVEGPADPHDILRLKGIEELAHYIVDEVQDVYRLQGVKINDKHIE
VIVRQMLRRVQIADVGDTKFIPGEQVERSELLDENDRVIAEGKRPATYENLLLGITKASL
STDSFISAASFQETTRVLTEAAIMGKTDDLRGLKENVIVGRLIPAGTGLAYHRARKAREA
SERERAQAIAEEEQSLFIEPAPVVQATTEGEGDNA
NT seq
4248 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcattgctcgatctctttaagcaggtacagcaggaagagcagttcgacgcgatc
aagatcggcctggcctcgcccgagaagatccgttcgtggtcgtacggcgaagtgaagaag
ccggaaacgatcaactaccgtaccttcaagccggaacgcgacggcctgttctgcgccaag
atctttggcccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcctgaagcac
cgtggcgtgatctgcgagaagtgcggcgttgaagtgacgctggccaaggtgcgccgcgag
cgcatgggccacatcgaactggccgcgccgaccgcgcacatctggttcctgaagtcgctg
ccgtcgcgcctgggcatggtcctggacatgacgctgcgcgacatcgagcgcgtgctgtac
tttgaagcattcgtggtgatcgaacccggcatgaccccgctcaagaagagccagatcatg
tccgaggacgactacctggcgaagtgcgacgagtacggcgagggcgagttcgtcgccatg
atgggtgccgagggcatccgtgaactgctgcgcggcatcgacatcgagaagcagatcgaa
cagatccgcgccgagctgcaggccaccggctctgaagccaagatcaagaagttcgccaag
cgcctgaaggtgctcgaggccttccagcgttcgggcatcaagcccgagtggatgatcctc
gaagtgctgccggtgctgccgcccgagttgcgtccgctggtgccgctggacggcggccgc
ttcgcgacctcggacctgaacgacctgtatcgccgcgtcatcaaccgtaacaaccgcctg
aagcgcctgctggagctgaaggcgcctgaaatcatcgtgcgcaacgaaaagcgcatgctg
caggaagcggttgactcgctgctggataacggccgtcgcggcaaggcgatgaccggtgcc
aacaagcgtccgctgaagtccctggccgaaatgatcaagggcaagggcggccgtttccgt
cagaacctgctgggcaagcgcgtcgactactcgggccgttcggtcatcgtggtgggcccg
acgctcaagctgcaccagtgcggcctgcccaagctgatggcgctcgagctgttcaagccg
ttcatcttccacaagctggaaacgatgggcatcgccaccaccatcaaggcggcgaagaag
gaagtcgaaagccagaccccggtggtgtgggacatcctcgaagaggtgatccgcgagcac
ccggtgatgctgaaccgtgcgccgacgctgcaccgcctgggtatccaggcgttcgagccg
gtgctgatcgaaggcaaggccatccagctgcatccgctggtctgcgcggcgttcaacgcc
gacttcgacggtgaccagatggctgtccacgtgccgctgtcgctggaagcgcagatggaa
gcccgcaccctgatgctggcctccaacaacgtgctgttcccggccaacggcgatccgtcg
atcgtgccgtcgcaagacgtggtgctgggtctgtactacacgacccgcgacaagatcaac
ggccgcggcgagggcatgacctttgccgacatcagcgaagtgattcgcgcctacgagaac
aaggaagtcgaactggcttcgcgcgtgaacgtgcgtatcaccgagtatgagctggtcgac
aaggacgccgagggcgacgcccgtttcgcacccaagatcacgctgcaggccaccacggtc
ggccgcgcgatcctgtccgagatcctgcccaaggggctgccgttctcggtgctgaacaag
ccgctcaagaagaaggaaatctcgcgcctgatcaacaccgcgttccgcaagtgcggcctg
cgcgagactgtgatcttcgccgacaagctgctgcagtcgggcttccgcctggctacccgt
gccggtatctcgatcgccatcgacgatatgctggtgccgccgcagaaggaaaagatcatc
gccgaggcctcggccaaggtgaaggaatacgacaagcagtacatgtcgggtctggtgacc
gaccaggaacgctacaacaacgtcgttgacatctggggcgccgccggcgaccaggtgggc
aaggcgatgatggagcagctccagcacgaggacgtggtcgaccgcgaaggcaagaccgtg
aagcaagagtcgttcaactccatctacatgatggccgactcgggtgcacggggctcggca
gcgcagatccgccagctggccggtatgcgtggcctgatggccaagccggacggctcgatc
attgaaacgccgattacggcgaacttccgtgaaggcctgaacgttctgcagtacttcatc
tcgacccacggcgcccgtaagggcctggccgatacggcactgaagaccgcgaactcgggt
tacctgacccgtcgtctggtcgacgtgacgcaggatctggtcgtggtggaagacgattgc
ggcacctccaacggcgtggccatgaaggccctggtcgaaggcggtgaagtgatcgaagcc
ctgcgcgaccgtatcctcggccgtgtgaccgtggccgacgtggtcaaccctgaaacccag
gagaccgcgatcgaagccggcacgctgctggacgaagacctggtcgagctgatcgacaac
atcggcgtggacgaagtcaaggtccgcaccccgctgtcgtgcgacacgcgctacggcctg
tgcggcaagtgctatggccgcgacctgggccgcggcgtgctggtgaactccggcgaagcg
gtgggcgtgattgccgctcagtcgatcggtgagccgggcacgcagctgaccatgcgtacg
ttccacatcggtggtgcggcatcgcgtgcggcagtggcatcgagcgtggaagccaaggca
accggtaccgtgcgtttcacggcgaccatgcgttacgtcaccaatgcgaagggcgaactg
atcgtcatctcgcgttcgggcgaggcgctgatcaccgacgaccacggccgcgagcgcgaa
cgccacaagatcccgtacggcgccacgctgctggtgcaggacggccaggccatcaaggct
ggcacgcagctggccacgtgggatgcgctgactcgcccgatcgtttcggaatacaccggt
acgaccaagttcgagaacgtcgaagaaggcgtgaccgtcgccaagcagatggacgaagtg
acgggcctgtcgaccctggtcgtgatcgacgccaagcgccgcacggctgcaaccaagggc
atccgcccgcaggtcaagctgctcgacgccaacggccaggaagtgaagatcccgggcacg
gaccactccgtgaccatcggcttccaggtcggcgcgctgattaccgtgaaggatggccag
caggtgcacgtgggtgaagtgctcgcgcgtatcccgaccgaatcgcagaagacccgcgac
attaccggtggtctgccgcgagtggccgagctgttcgaagcgcgttcgccgaaggacgcc
gccgtgctggcggaagtcaccggcacgacctcgttcggcaaggacaccaagggcaagcag
cgcctggtcatcaccgacctggacggcaatgcccacgagttcctgatcgcgaaggaaaag
caggtgctggtgcacgacggccaggtggtgaacaagggcgaaatgatcgtggaaggtccg
gcggacccgcacgacatcctgcgcctgaagggcatcgaagagctggcgcactacatcgtg
gacgaagtccaggacgtgtaccgtctgcagggcgtgaagatcaacgacaagcatatcgaa
gtgattgttcgtcagatgctgcgccgcgtgcagatcgccgacgtgggcgacaccaagttc
atcccgggtgaacaggtggagcgttcggaactgctcgacgagaacgaccgcgtgatcgcc
gaaggcaagcgtccggccacgtacgagaacctgctgctcggtatcaccaaggcgtcgctg
tcgaccgacagcttcatctcggcggcatcgttccaggaaaccacgcgcgtgctgaccgaa
gccgcgatcatgggcaagaccgacgacctgcgtggtctgaaggaaaacgtgatcgtcggc
cgtctgatcccggccggtaccggcctggcctaccaccgcgcccgcaaggcgcgcgaggcc
tccgagcgcgaacgcgcccaggcgatcgccgaagaagagcagtcgctcttcatcgagccg
gcgccggtggtgcaggcgacgaccgaaggcgaaggcgacaacgcctga
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integrated database retrieval system
