Cupriavidus necator H16: H16_B0555
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Entry
H16_B0555 CDS
T00416
Symbol
h16_B0555
Name
(GenBank) RtcB Protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
reh
Cupriavidus necator H16
Brite
KEGG Orthology (KO) [BR:
reh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
reh03016
]
H16_B0555 (h16_B0555)
Enzymes [BR:
reh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
H16_B0555 (h16_B0555)
Transfer RNA biogenesis [BR:
reh03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
H16_B0555 (h16_B0555)
Prokaryotic type
tRNA splicing ligases
H16_B0555 (h16_B0555)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
CAJ95352
UniProt:
Q0K3S2
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All DBs
Position
2:625460..626689
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AA seq
409 aa
AA seq
DB search
MTDKRHYDVLDTGAGKPVKLWTRGVPVEGAAREQLLNTARMPFIFRHVAVMPDVHLGKGS
TIGSVIPTVGAVIPAAVGVDIGCGMMAVKTSLTAADLPDNLGPLRSAIEHAVPHGRTAQG
GRRDQGAWGSAPAPVDAAWAEMAPGFRRITDKYPHLARTNHRNHLGTLGTGNHFIEVCLD
EAQSVWFMLHSGSRGVGNAIGTTFISLAQQDMRKHLANLPDRDLAYLVEGSTHYEDYIFA
VSWAQAYARRNRELMMEAVLAAAQRVLRKPFQAQLEAVNCHHNYVQKEHHFGADVLVTRK
GAVSARVGELGIIPGSMGARSFIVRGKGNPESFCSCSHGAGRTMSRSEAKRRFTVADQVH
ATEGVECRKDAAVIDEIPMAYKDIDAVMAAQADLVEIVHTLRQVVCVKG
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atgacggacaagcgccactatgacgtgctggacaccggcgccggcaagccggtcaagctg
tggacgcgcggcgtcccggtggaaggcgctgcccgcgagcaactgctgaacacggcgcgg
atgccgttcatcttccgccatgttgcggtgatgccggatgtacatctgggcaagggctcg
accatcggctcggtgatcccgaccgtgggcgcggtgattcccgccgcggtgggcgtggat
atcggctgcggcatgatggccgtgaagacctcgctcaccgccgctgacctgcccgacaac
ctcgggccgctgcgcagcgcgatcgagcacgccgttcctcacggtcgcaccgcgcagggc
gggcggcgcgaccagggggcctggggctcggcgccggcgcccgttgacgcggcatgggcc
gaaatggcgccgggctttcgccgcatcaccgacaagtatccgcacctggcgcgcaccaac
catcgcaatcacctgggcacgctcggcaccggcaaccactttatcgaggtgtgcctggac
gaggcccagtcagtctggttcatgctgcacagcggctcgcgcggcgtcggcaatgccatc
ggcacgaccttcatttcgctggcgcagcaggacatgcgcaagcacctcgccaacctgccg
gaccgcgacctggcctacctggtcgaaggctccacgcactacgaggactacatcttcgcc
gtgtcatgggcccaggcctacgcgcgccgcaaccgcgagctgatgatggaggcggtgctg
gccgctgcgcagcgcgtgctgcgcaagcccttccaggcgcagctggaggcggtcaactgc
caccacaactacgtgcagaaggagcatcacttcggcgccgacgtgctggtaacgcgcaag
ggcgcggtcagtgcgcgcgtgggcgagctgggcatcatcccgggatcgatgggcgcgcgc
tcgttcatcgtgcgcggcaagggcaacccggaatcgttctgctcatgcagccacggcgcg
gggcgcaccatgagccgcagcgaggccaagcgccgtttcaccgtggccgaccaggtgcat
gcgaccgagggggtcgaatgccgcaaggacgccgcggtgatcgacgagatcccgatggcg
tacaaggacatcgacgcggtgatggcggcgcaggctgacctggtggagatcgtgcacacg
ttgcggcaggtggtgtgcgtgaaaggctga
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