Rhizobium etli bv. mimosae IE4771: IE4771_CH01681
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Entry
IE4771_CH01681 CDS
T03310
Symbol
dnaE1
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rei
Rhizobium etli bv. mimosae IE4771
Pathway
rei03030
DNA replication
rei03430
Mismatch repair
rei03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IE4771_CH01681 (dnaE1)
03430 Mismatch repair
IE4771_CH01681 (dnaE1)
03440 Homologous recombination
IE4771_CH01681 (dnaE1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rei03032
]
IE4771_CH01681 (dnaE1)
03400 DNA repair and recombination proteins [BR:
rei03400
]
IE4771_CH01681 (dnaE1)
Enzymes [BR:
rei01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
IE4771_CH01681 (dnaE1)
DNA replication proteins [BR:
rei03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
IE4771_CH01681 (dnaE1)
DNA repair and recombination proteins [BR:
rei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
IE4771_CH01681 (dnaE1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
HROB
Motif
Other DBs
NCBI-ProteinID:
AIC26818
UniProt:
A0A060HV42
LinkDB
All DBs
Position
1687582..1691079
Genome browser
AA seq
1165 aa
AA seq
DB search
MADTVKGSTGEAIGGTPGFIHLRVHSAYSLLEGALPLKKILYKATGDSQPAIAITDTNNL
FVALEFSQKAMDEGLQPIIGCQVSIDMEDGLETEKRGGQQALVKLPSIVLLAATEAGYER
LVDLVSRAYLGGDSNQAIHIKASWLEDAGTEGLIALTGALTGPVDSAVRDGHPAQAEARL
LMLKRLFGDRLYVELQRHGTYDKRHEQKIVGLAYAHDLPLVATNEAFFPTRDDYDAHDAL
MAVAHNAIVSDDSRFRLTPDHFLKSRAEMAKLFADLPEALENTIEIAKRCSFVLKTRKPI
LPRFTGATDDAEEAERAEASELRRQAVEGLDMRLSTLGMSPGYEEKDYRERLDFELSVIE
RMRFPGYFLIVADFIKWAKQHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLN
PERVSMPDFDIDFCQDRREEVIRYVQAKYGREQVAQIITFGSLQARAALRDVGRVLEMPY
GQVDKICKLVPNNPANPTPLSKAIEEEPKLQEEAAKEPVVARLLDIAQKIEGLYRHASTH
AAGIVIGDRPLSKLVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKVAVDF
VAKRGISVDLAAIPLDDKKTYEMLSRGETVGVFQVESAGMRKALIGMKPDCIEDIIALVA
LYRPGPMENIPTYNARKHGDEELESIHPMIDHLLKETQGVIVYQEQVMQIAQVLSGYSLG
EADLLRRAMGKKIKAEMDQQRERFVDGAVKNGVSKPQADNIFELLAKFANYGFNKSHAAA
YAIVSYQTAYMKAHYPVEFLAASMTLDMSNTEKVNDFRQDAKRLGIEVIAPSVQTSFRQF
ETGDNRIYYALAALKGVGESAVDHIVEVRGDKPFAGIEDFCLRIDPRQVNRRVLESLIFA
GAFDCFGTDRAQLSAGLDRILGYAQRAQENKLSGQSDIFGSTLTSGPEKIALPPFSPWLA
SERLLKEFQVLGFYLTAHPLDSYSNILQKMRVQTFAEFSAAIKQGASNARLAGTVISKQE
RKTRTGNKMGIIVFSDSSGQFEAVLFSEMLNQYRDMLESGKSFLLTATGEERPEGIGLRI
QTIQSLEEKSLQMQKALRVYIRDSGPLKMVAGHLNAKGDGLVSFIVIKEEGKREVEVALP
EKYRITPEIAAALRAAPGVVDVELV
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atggcggatacggtaaagggttcgacgggtgaggcaatcggcggcacgccgggcttcatt
cacctgagggtccactccgcttattcgcttctcgaaggcgcactgccgctgaagaagatc
ctctacaaggcgaccggcgacagccaaccggccatcgcgatcaccgacaccaacaatctg
ttcgtcgccctggaattctcccagaaggcaatggacgagggactgcagccgatcatcggc
tgccaagtctcgatcgacatggaagacgggctggagaccgaaaagcgcggcggccagcag
gcgttggtcaagctgccgtcgattgtccttctcgccgcgacggaggccggttacgaaagg
ctggtcgacctcgtcagccgcgcctatttgggcggcgacagcaaccaggccattcatatc
aaagcctcctggctggaggacgccggcacggaagggctgatcgccttgaccggcgccctg
accgggccggtcgattctgccgtccgggatggtcatcccgcccaggccgaagcgcggctg
ctcatgctgaagcgtctcttcggcgacaggctctatgtcgaactgcagcgtcatggcacc
tacgataagcggcacgagcagaagatcgtcgggctcgcctatgcccacgacctgccgctg
gtcgcgaccaacgaggccttttttccgacgcgcgacgattacgacgcccatgatgcgctg
atggcggttgctcataacgccatcgtctccgacgacagccgctttcgcctgacgccggat
cattttctgaagagccgggccgagatggccaagctctttgccgatctgccggaagcgctg
gagaacacgatcgagatcgccaagcgttgctccttcgtgttgaagacgcgcaaaccgatc
ctgccacgcttcaccggtgcgaccgacgatgccgaggaggccgagcgcgccgaggcgagc
gaactgcgccgccaggcggtcgaagggttggacatgcggctttcgaccctcggcatgtcg
ccgggttatgaggagaaggattatcgcgagcgcctggatttcgagctcagcgtcatcgaa
cgcatgcgctttcccggctacttcctgatcgttgccgacttcatcaaatgggccaagcag
catgacattccggttggtcccggccgcggttccggcgccggttcgctggtcgcttacgcg
ctgacgatcaccgacgtcgatcccttgcggttttcgctgctgttcgagcgcttcctcaat
ccggaacgcgtctcgatgccggacttcgacatcgacttctgccaggaccgccgcgaagaa
gtgatccgatacgtccaggccaagtacggccgcgaacaggtggcgcagatcatcaccttc
ggttcgctgcaggcgcgcgccgcactccgcgacgtcggccgcgtgctggagatgccctac
ggccaggtcgacaagatctgcaaacttgtaccgaataatccggccaatccgacgccgctc
tccaaggcaatcgaggaggagccgaagctgcaggaggaggcggcgaaggaaccggtcgtc
gcgcgcttgctcgatatcgcccagaagatcgaggggctttaccgccatgcctcgacccat
gccgccggtatcgtcatcggcgaccggccgctgtccaagctggtgccgatgtatcgcgat
ccgcgctccgacatgccggtcacccagttcaacatgaaatgggttgagcaggcgggcctc
gtcaaattcgacttccttggcctgaagacgctgaccgtcctgaaggtcgccgtcgatttc
gtcgccaagcgcggcatcagtgtcgaccttgcggccattccgctggacgacaagaagacc
tacgagatgctgtcacgcggcgaaacggtcggcgtgttccaggtggaaagtgccggcatg
cgcaaggcgctgatcggcatgaagccggactgcatcgaggacatcatcgcgctggtggcg
ctctatcgtccgggcccgatggagaacatcccgacctacaatgcccgcaagcacggtgac
gaagagctggaatcgatccatccgatgatcgaccacctgctcaaggaaacccagggcgtc
atcgtctatcaggaacaggtgatgcagatcgcccaggtgctgtccggttattcgctcgga
gaggccgatcttttgcgccgcgccatgggtaagaagatcaaggccgagatggaccagcag
cgcgaacgcttcgtcgatggcgctgtcaagaacggcgtatcgaagccgcaagccgacaat
atcttcgaactgctggcgaagttcgccaattacggcttcaacaagtcgcatgccgccgca
tacgccattgtctcctaccagacggcctatatgaaggcgcattatccggtcgaattcctc
gccgcctcgatgacgctcgacatgtccaacacggaaaaggtcaatgacttccgccaggac
gccaagcgcctcggcatcgaggtgatcgccccgtcggtgcagacctccttccgccagttc
gaaaccggcgacaaccgcatctattatgcgctcgccgccctcaagggcgtcggcgaatcc
gccgtcgaccatatcgtcgaggtgcgcggcgacaagccctttgccggcatcgaggatttc
tgcctgcgcatcgatccgcgccaggtcaatcgccgcgtcttggaaagcctgatctttgcc
ggtgccttcgattgtttcggcacggaccgcgcccagctttcagccgggctcgaccgtatc
ctcggctatgcccagcgcgcccaggaaaacaagctgagcggccagtcggatattttcggc
agcaccctgacctcgggccccgagaagatcgccctgccgccgttttcgccctggcttgcc
tcggagcggctgctcaaggagttccaggtgctgggcttctatctcaccgcccacccgctc
gattcctacagcaacatcctgcagaagatgcgggtgcagacctttgccgagttttccgca
gcaatcaagcagggcgcgtcgaatgcgcgccttgccggcaccgtcatctccaagcaggag
cgcaagacccgcaccggtaacaagatgggcatcatcgtcttttcggattcgtcgggccag
ttcgaggccgtgctgttttcggaaatgctgaaccagtaccgcgacatgttggagtccgga
aaatccttcctgctgaccgcgaccggcgaggagcggccggagggcatcggtctgcgcatc
cagacgatccagtcgctagaggaaaagtcgctgcagatgcagaaggcactgcgcgtttat
atcagagattccgggccgctgaaaatggtcgccggccatctgaacgccaagggcgacggc
ctggtttccttcatcgtcatcaaggaagagggcaagcgcgaggtcgaagtggcgctgccg
gagaaataccgcatcaccccggagatcgccgccgctcttcgcgcggcccccggagtggtc
gacgtcgagcttgtctga
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