Rhizobium etli bv. mimosae IE4771: IE4771_CH03078
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Entry
IE4771_CH03078 CDS
T03310
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rei
Rhizobium etli bv. mimosae IE4771
Pathway
rei03420
Nucleotide excision repair
rei03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IE4771_CH03078 (uvrD)
03430 Mismatch repair
IE4771_CH03078 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rei03400
]
IE4771_CH03078 (uvrD)
Enzymes [BR:
rei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IE4771_CH03078 (uvrD)
DNA repair and recombination proteins [BR:
rei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IE4771_CH03078 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
IE4771_CH03078 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
PcrA_UvrD_tudor
AAA_11
DUF4420
Motif
Other DBs
NCBI-ProteinID:
AIC28171
UniProt:
A0A060I990
LinkDB
All DBs
Position
3041910..3044390
Genome browser
AA seq
826 aa
AA seq
DB search
MSNSFDDIPFFDEEPGEMARKPQPPAAPAGRAPAAGGGIAARAMAARDGGKRPDYLAGLN
PEQTEAVETLEGPVLVLAGAGTGKTRVLTTRIAHILNTGRAFPSQILAVTFTNKAAREMK
ERIALLVGGAVEGMPWLGTFHSIGVKLLRRHAELVGLSSDFTILDTDDVVRLIKQLIQAE
GLDDKRWPAKQFAGMIDTWKNKGLGPADIPEGDARAFANGRGRDLYFAYQARLSTLNACD
FGDLLMHPIAIFRKNPDLLKEYHGRFRYILVDEYQDTNTAQYMWLRLLAQRSKGEPQNVC
CVGDDDQSIYGWRGAEVDNILRFEKDFPGAKVIKLERNYRSTEHILGAAAHLIAHNEGRL
GKTLFTDRADPDDVKVQVHASWDSEEEARAIGEEIEQLQRGKHLLNDMAILVRASFQMRE
FEDRFVTLGLNYRVIGGPRFYERLEIRDAMAYFRLVAQPADDLAFERIINTPKRGLGDTT
VRALHDYARARDIPMLAAAADIIETDELKPKARKALFDVIQSFRRWQEMLENTPHTELAE
QILEESGYTDMWKNDKSAEAPGRLENLKELIRSMESFESMRGFLEHVSLVMDAETNENLD
AVSIMTLHSAKGLEFDTVFLPGWEEGLFPHQRSLDESGRAGLEEERRLAYVGITRAKRRC
HIWFVSNRRIHGLWQSTLPSRFLDELPETHVEVAEMEQSYGGYGRGGYGQSRFDKAEPFA
NSYSTPGWKRAQANKTDATRDNWGTRSGHAVERIGYGESGPKGRTIDGELVAKSTSSEPS
RFTLGDRVFHMKFGNGNITGIEGNKLTIDFDRAGQKRVLDGFVERV
NT seq
2481 nt
NT seq
+upstream
nt +downstream
nt
atgagcaatagtttcgacgacatccccttcttcgacgaagagccgggcgaaatggcgcgc
aagccgcagccgcctgccgcacccgccggaagggcgcccgctgccggcggcggtatcgcc
gcccgcgccatggcggcgcgagacggcggcaagcgaccggattacctcgcgggcctcaat
cccgaacagacggaagccgtggaaaccttggaaggtccggttctcgtcctcgctggcgcc
ggcaccggcaagacacgagtactgaccacgcgcatcgcccacatcctcaataccggccgc
gccttcccatcgcagattctcgccgtcaccttcaccaacaaggccgcccgcgagatgaag
gagcgcatcgcgctcctcgtcggcggcgccgtcgaaggcatgccctggctcggcaccttc
cattcgatcggcgtcaagcttctgcgccgccacgccgaactcgtcggcctcagctccgat
ttcaccattctcgacaccgacgacgtcgtccgcctgatcaagcagctgatccaggccgag
ggtctcgacgacaaacgctggccggccaagcagttcgccggcatgatcgacacctggaag
aacaaaggcctcggcccggccgatattcccgaaggcgacgcccgcgcctttgccaatggc
cgcggccgcgatctctatttcgcctatcaggcgcgcctgtcgacgctcaacgcctgcgat
ttcggcgatctgctgatgcatccgatcgcgatcttccgcaagaacccggatctcctcaag
gaatatcacggccgcttccgttatatcctcgtcgacgaatatcaggacaccaacaccgcg
caatatatgtggctgaggctgctggctcagcgcagcaagggcgagccgcagaatgtctgc
tgcgtcggcgacgatgaccagtccatctacggctggcgcggcgccgaggtcgacaatatc
ctgcgcttcgagaaggatttccccggcgccaaggtgatcaagctcgagcgcaattatcgc
tcgaccgaacatatcctcggtgcggccgcccatctgatcgcccataatgaaggccgcctg
ggcaagacgctgttcaccgaccgcgccgatcccgacgacgtcaaggtgcaggtccacgcc
tcctgggattcggaggaggaagcccgcgccatcggcgaagagatcgagcagctccagcgg
ggcaagcatctgctgaacgacatggcgatcctcgtgcgcgcttccttccagatgcgcgag
ttcgaagaccgcttcgtcaccctcggcctcaactaccgcgtcatcggcggcccgcgcttc
tatgaacgcctcgaaatccgcgacgccatggcctatttccgcttggtcgcgcagccggcg
gacgacctcgccttcgagcgcatcatcaacacgccgaagcgcggcctcggcgatacgacg
gtgcgcgccctgcatgattatgcccgcgcccgcgatatcccgatgctggccgcggcagcc
gacatcatcgagaccgacgaactgaaaccgaaggcgcgcaaagccctcttcgacgtgatt
caatctttccgccgatggcaggaaatgcttgaaaacacaccgcataccgaacttgccgag
cagatcctcgaggagtccggctataccgatatgtggaagaacgacaagagcgccgaagcg
cccgggcgccttgaaaacctgaaagaactgatccgctcgatggagagcttcgagtcgatg
cgcggtttcctcgagcacgtctccctcgtcatggatgcagagaccaacgagaacctcgac
gccgtttcgatcatgacgctgcattcggccaagggcctggaattcgataccgtcttcctg
cccggctgggaggaaggcctgttcccgcaccagcgctcgctggatgaaagcggccgcgcc
ggcctggaggaggaacgccggctggcctatgtcggcatcacccgcgccaagcgccgctgc
cacatctggttcgtctccaaccgccgcatccacggcctctggcaatcgacgctgccctcg
cgtttccttgacgagctgccggaaacccatgtcgaggtcgccgagatggagcagagctac
ggcggttacggccgcggcggctacggccagtcccgcttcgacaaggccgaacctttcgcc
aactcctattccacgcccggctggaaacgtgcccaggccaacaagaccgatgccacgcgc
gacaactggggcacccgctccggccacgccgtcgaacgcatcgggtatggcgaaagcggc
ccgaagggacgcacgatcgatggcgagctggtggcgaagtcgacctcgtcggagccgtcg
cgcttcaccctcggcgatcgcgtattccacatgaaattcggcaatggcaacattaccggc
attgaaggcaacaagctgacgatcgacttcgaccgtgcggggcagaagcgggtgctggac
ggtttcgtcgagcgcgtctga
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