Rhizobium etli bv. mimosae IE4771: IE4771_CH03213
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Entry
IE4771_CH03213 CDS
T03310
Symbol
sigA
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
rei
Rhizobium etli bv. mimosae IE4771
Pathway
rei02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rei00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
IE4771_CH03213 (sigA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rei03021
]
IE4771_CH03213 (sigA)
Transcription machinery [BR:
rei03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
IE4771_CH03213 (sigA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
DUF5856
Phage_DsbA
DUF4350_C
DUF3106
DUF4351
Motif
Other DBs
NCBI-ProteinID:
AIC28300
UniProt:
A0A060I8H9
LinkDB
All DBs
Position
complement(3171706..3173763)
Genome browser
AA seq
685 aa
AA seq
DB search
MATKVKENEDAEVERDGASDGPLLDLSDDAVKKMIKAAKKRGYVTMDELNAVLPSEEVTS
EQIEDTMSMLSDMGINVIEDEEAEEAGASGGGDDDDAGGDEDSEGGELAPSGGTALATAK
KKEPTDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQALII
WRDELNEGTTLLREIIDLETTYSGPEAKAAPQFQSPEKIEADRKAAEEKEKTRRARSGDD
DITDVGGEGLPPEEEEEDEDESNLSLAAMEAELRPQVMETLDTIAETYKKLRKLQDQQVE
QRLSASGTLSSAQERRYKELKDELIKAVKSLSLNQNRIDALVEQLYDINKRLVSNEGRLL
RLAESYGVKRDSFLEQYQGAELDPNWMKSIGNLAARGWKEFAKGENTTIRDIRQEIQNLA
TETGISISEFRRIVHMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEG
NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSR
QMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNA
LLPIDAAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIR
QIEAKALRKLKHPSRSRKLRSFLDS
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccaaggtcaaagagaacgaagacgcggaagtcgaacgcgacggcgcaagcgac
ggccctcttctcgatctttccgacgacgcggtcaagaagatgatcaaggccgccaagaag
cgcggctacgtgacgatggatgagctcaacgccgtcctgccgtccgaggaagtgacgtcc
gagcagatcgaagacacgatgtcgatgctttcggacatgggcatcaacgtcatcgaggac
gaagaagccgaggaagccggcgcttccggcggcggcgatgacgatgatgccggcggcgac
gaggacagcgaaggcggcgaactcgcgccttccggcggcaccgcgctggctaccgccaag
aagaaagagccgaccgaccgtaccgacgatccggtgcgcatgtatctgcgcgaaatgggc
tcggtggaactgctctcccgcgagggcgaaatcgccatcgccaagcgcatcgaggctggc
cgcgagacaatgatcgcaggcctctgtgagagcccgctgaccttccaggcgctgatcatc
tggcgcgacgaactcaacgaaggcacgacgctgctgcgcgagatcatagatctcgagacg
acctattccggtcctgaggccaaggccgcgccgcagttccagagccccgagaagatcgag
gccgaccgcaaggccgccgaggagaaggaaaagacccgccgcgcccgctccggcgacgac
gacatcaccgatgtcggcggcgaaggcctgcctcccgaggaggaggaagaggacgaggac
gaatccaacctctcgctggcggcgatggaagccgagcttcgcccgcaggtgatggagacg
ctcgatacgatcgccgagacctacaagaagctgcgcaagctgcaggaccagcaggtcgag
cagcgcctgtcggcctccggcacgctttcttccgcccaggagcgccgctacaaggagctc
aaggacgagctcatcaaggccgtcaagtcgctgtcgctcaaccagaaccgcatcgatgcg
ctggtcgagcagctttacgacatcaacaagcgcctcgtctccaacgaaggccgcctgctg
cgtctggccgaatcctacggcgtcaagcgcgatagcttcctggaacagtaccagggcgcc
gagctcgatccgaactggatgaagtcgatcggcaatctggccgcccgcggctggaaggaa
ttcgccaagggcgagaacacgacgatccgcgacatccgccaggagatccagaatctggcg
accgagaccggcatttcgatttcggaattccgccgcatcgtccacatggtgcagaagggc
gagcgcgaagcgcgcatcgccaagaaggaaatggtcgaagcgaaccttcgcctcgtcatc
tccatcgccaagaagtacacgaaccgcggcctgcagttcctcgacctcattcaggaaggc
aatatcggcctgatgaaggcggtcgacaagttcgaatatcgccgcggttacaagttctcg
acctatgcgacatggtggatccggcaggcgatcactcgttcgatcgccgaccaggcccgc
acgatccgcatcccggtgcacatgatcgagacgatcaacaagatcgtccgcacctcgcgc
cagatgctgcacgagatcggtcgcgaaccgacgccggaggagctggccgaaaagctcgcc
atgccgctcgaaaaggtccgcaaagtcctgaagatcgccaaggagccgatctcgctcgaa
accccggtcggcgacgaagaggattcgcatctcggcgatttcatcgaggacaagaacgcc
ctgctgccgatcgacgccgccatccaggcgaacctgcgcgagacgaccacccgcgtcctc
gcctcactgacgccgcgcgaggaacgcgtgctgcgcatgcgcttcggcatcggcatgaac
accgaccatacgctcgaagaagtcggccagcagttctcggtcacccgcgaacgtatccgc
cagatcgaggcgaaggcgctgcgcaagctcaagcatccgagccgctcgcgcaagctgcgc
tcgttcctcgacagctaa
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