Reichenbachiella agarivorans: N6H18_06140
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Entry
N6H18_06140 CDS
T08483
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
rek
Reichenbachiella agarivorans
Pathway
rek03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rek00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N6H18_06140 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rek03019
]
N6H18_06140 (rnr)
03016 Transfer RNA biogenesis [BR:
rek03016
]
N6H18_06140 (rnr)
Enzymes [BR:
rek01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
N6H18_06140 (rnr)
Messenger RNA biogenesis [BR:
rek03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
N6H18_06140 (rnr)
Transfer RNA biogenesis [BR:
rek03016
]
Prokaryotic type
tRNA degradation factors
N6H18_06140 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
OB_RNR_1st
RcpB
RNase_II_C_S1
Rrp44_S1
DUF3568
Motif
Other DBs
NCBI-ProteinID:
UXP33532
UniProt:
A0ABY6CSN4
LinkDB
All DBs
Position
complement(1457244..1459424)
Genome browser
AA seq
726 aa
AA seq
DB search
MAQKKKNSRRKESTAKPANLNTLKRSIQELFQENAGASLSVKQIFAKAGIRDKNSKRETV
SYLLELEHEGILRQLRNGHFMTAESSLPTSGLIGKVDHVNQRFAYVILQDNSDEEKNDIW
VKTDDLMNAIDGDIVEVKLKKNSRGNKPEGKVVRLVERSKKEFVGKIEIFPKYAFVVPDN
RKIHVDIFVYPEKIGDAKTNDKVIVKIKEWHGGKAKNPVGQVTKILGPAGENEAEIHSIM
AEFDLPFEFPKHVEQAAEAIDITITQEEIKKRKDFREITTFTIDPEDAKDFDDAISIQKL
KNGNYEIGVHIADVSHYVEPGSILDEEAINRATSVYLVDRTIPMLPEKLSNGVCSLRPNE
EKLTFSAVFEIDEDAKVKKSWFGRTIIYSDRRFTYEEAQERIETKEGDFQEEINILNGLA
KKLKVKRFKNGAINFETVEVKFKLDENGKPLGIIPKVRKDAHKLVEEFMLLANKSVAQYV
YKLDQGNDTFVYRVHDSPDPERLDSFTKFAVKFGHRVTGINSDVAKALNQLMEDIQGKPE
QNVLESLAIRSMSKAAYVTDPKGHFGLAFDHYTHFTSPIRRYPDVMVHRLMQHYLLNKKS
PKKDEYVELCKHSSEREKRAADAERASIKFKQVEYMQSVEDKAFDGVIAGVTEFGIFVEI
TETKCEGMVRASSMTDDFYEFDEKNYCMIGKRNKRVFTLGDRVIVRVVGTDINRRTIDLE
FVDLDD
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atggcccaaaaaaagaagaacagtcgcagaaaagaatccacagctaaaccggccaacctc
aataccctcaaaagatctattcaggagttgtttcaggaaaatgctggagcaagtctttcg
gtcaaacaaatattcgccaaagcaggcatccgtgacaaaaacagcaaaagagaaacggtc
agctatctcttagaactagagcacgagggaattctccgacaactcagaaatggccatttc
atgactgccgaatcgagtttgcctacatctggattgattggcaaagtcgatcacgtcaac
cagcgctttgcctatgtcatcttgcaagacaactctgatgaagaaaaaaatgacatctgg
gtcaaaacagatgacctaatgaacgccatcgacggtgatatcgtagaggtcaaactgaaa
aaaaactcccggggcaacaaacccgaaggaaaagtagtacgcctagttgagcgtagcaaa
aaagaatttgtaggaaaaatagaaatcttcccaaaatacgctttcgtcgtaccagacaac
cgaaaaatccatgttgatatttttgtctatcccgaaaaaataggagacgccaagaccaat
gacaaagtcatcgtcaagatcaaagaatggcacggaggcaaagcaaaaaatccagtcggg
caagtaaccaaaatactggggcctgcaggagaaaatgaggctgaaattcactccatcatg
gctgagtttgatttgccgtttgagtttcccaagcatgtcgagcaagcagctgaagcaatt
gatattacgattacccaagaggaaatcaagaaaagaaaagatttcagagagatcactact
ttcaccattgacccagaagatgccaaagattttgacgatgcgatttccatccaaaaacta
aaaaatggcaactacgaaatcggtgtacacatcgccgatgtctctcactacgtggaacca
ggcagcattctcgacgaggaagctatcaacagagcaacctctgtctatttggtggatcgg
acgatacccatgcttccagaaaaactctccaatggcgtttgctcactgagacccaatgaa
gaaaaattgaccttctcagcggtatttgagattgatgaggatgccaaagtcaagaaatct
tggtttggtcgtacgatcatctactctgacagacgatttacctatgaagaagcacaagag
cgcatcgaaacaaaagaaggagacttccaagaggaaatcaatattctcaatggtctggcc
aagaaattgaaagtcaaacgcttcaaaaatggagcgatcaactttgaaaccgtggaggta
aaattcaagttggacgaaaacggaaaaccattgggcatcatcccaaaagtcagaaaagac
gcccacaaactggtggaggaattcatgctcctcgccaacaaatctgtagcacagtatgtc
tacaaattggatcaaggcaacgatacctttgtgtaccgtgtccatgacagcccggatcca
gaaaggctcgacagctttaccaaatttgccgtaaaattcggacaccgcgtcaccggcatc
aacagcgatgtagccaaggcactaaaccaactcatggaagacatacaaggcaagcctgag
cagaacgtcctggaatcactggcgattcgctctatgtccaaagccgcctatgtcactgat
cccaaaggacactttggtttggcatttgaccactacacgcattttacctccccaatcagg
aggtatcccgatgtgatggtccacagactcatgcagcactacctcctcaacaaaaaatcg
cctaaaaaagatgaatatgtcgagctatgtaagcactcttcggagcgagaaaaacgtgcc
gcagatgcagaaagagcatcgatcaaattcaaacaagtagagtacatgcagtctgttgag
gacaaagcatttgatggggtgatagcaggtgtcactgagtttggcatatttgtagaaatc
accgaaaccaaatgcgagggcatggtcagggcatcctcaatgacagacgacttctacgaa
tttgacgaaaagaactattgcatgattggcaaacgcaacaaaagagtatttactttgggc
gatcgtgtgattgtgagggtagtcggtaccgatatcaatcgacgtaccattgacttagag
tttgttgatttagatgactga
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