Reichenbachiella agarivorans: N6H18_06370
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Entry
N6H18_06370 CDS
T08483
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
rek
Reichenbachiella agarivorans
Pathway
rek03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rek00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N6H18_06370 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rek03021
]
N6H18_06370 (rho)
03019 Messenger RNA biogenesis [BR:
rek03019
]
N6H18_06370 (rho)
Transcription machinery [BR:
rek03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
N6H18_06370 (rho)
Messenger RNA biogenesis [BR:
rek03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
N6H18_06370 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_22
AAA_25
OB_RNB
AAA
ATPase_2
Mor
AAA_16
Motif
Other DBs
NCBI-ProteinID:
UXP33577
LinkDB
All DBs
Position
complement(1509458..1511167)
Genome browser
AA seq
569 aa
AA seq
DB search
MYNIEELNDRLLSELKEIAEGLGVKNFKRAAKKELIYKILDEQAVNPEPAKQIKAKESQS
KAETVIAEKPADTERKPKSEPRPERREEKSPADKSADDVLKSFDLDIDGSGAKASAEKPK
AEAQPRREPREAKPQREPREQREPKEQKQPSEQGQPKSEADSSDVEKAERQENRERQDRE
KRPEKNSKKAEYNNSVKDFDGVIENGGVLEIMQDGYGFLRSGDYNYLASPDDIYVSPSQI
KLFGLKTGDSVIGQIRPPKDGEKYFALLKVTTVNGKTTEEIRDRVPFEYLTPLFPEEKLN
LSYKATDYSTRIMDLFSPIGKGQRGMIVAQPKTGKTVLLKNVANAIAQNHPEVYLMILLI
DERPEEVTDMARSVKAEVIASTFDEQAERHVKVANIVLEKAKRMVECGHDVVILLDSITR
LARAHNTVVPSSGKILSGGVDANALHKPKRFFGAARNVENGGSLTILATALIETGSKMDE
VIFEEFKGTGNMELQLDRKLSNKRVYPAIDIPASGTRREDLLMDKDELSKVWILRKFMDD
MNSAEAMEFLLGKMKGTRNNEEFLISMNG
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgtacaacatcgaagaattgaatgacagactactgtctgagctaaaggaaatagctgag
ggtctgggagtcaaaaattttaaaagagccgcaaaaaaagagcttatctacaaaatactg
gacgaacaagcggtcaatccagagcctgccaaacaaatcaaagccaaagagtctcaatcc
aaagcagagacagttattgccgaaaaaccagctgatacagaaagaaaacccaaatcagaa
cctagaccagaaagaagagaagaaaaatccccagcagataaaagtgctgacgatgtattg
aaatcttttgatttggatatagatgggtctggagccaaagcctcagctgaaaagcctaaa
gctgaagcacaaccaagaagagagccaagagaagcaaaaccacaaagagaaccaagagag
caaagggagccaaaagaacagaagcaaccaagcgaacaaggacagcccaagagtgaggct
gactctagtgatgttgaaaaggcagaacgccaagaaaatagagaacgtcaggacagagaa
aaacgccctgagaaaaattctaaaaaagccgagtacaacaacagtgtcaaggattttgat
ggtgtgatcgaaaacggtggtgtactagaaatcatgcaagatggatatggtttcttgaga
tcaggagattacaactatttggctagtccagacgatatttatgtttctccatcgcaaatc
aagttgtttggattgaaaactggtgactcggtgattggccaaattagacctccaaaagac
ggtgaaaaatattttgcactattgaaagtgacaactgtcaacggtaagacgacagaagaa
atcagagacagagtgccatttgagtacttgactcctttgttcccagaggaaaaattgaac
ttgagctataaggctacagactactctactagaatcatggatttgttctcaccgattggt
aagggacaaagaggcatgatcgtagcacaaccaaagacaggtaaaacagtcttgttgaaa
aatgtagcaaacgctatcgcacaaaatcaccctgaagtctacctaatgatcttgttgatc
gatgaacgaccagaggaagtaacagacatggctcgtagtgtaaaggcagaagtgattgct
tctacgtttgacgaacaagcagagagacatgtgaaagttgccaatatagtgttggaaaaa
gccaagagaatggttgaatgcggtcatgacgtagtgatcctgttggactcaattacaaga
ctcgctcgtgcacacaatacggtagtaccttctagtggcaagatcctttcgggtggtgtg
gatgccaatgccctgcacaaaccaaagagattctttggtgctgcaagaaatgtagaaaac
ggtggttctttgactattctagctactgcattgatagaaacaggttcgaaaatggacgaa
gtaatcttcgaagaattcaaaggaacgggtaacatggaacttcaactggatcgtaaacta
tctaacaagagagtgtatccagcaatcgacatcccagcatcagggacaagaagagaagat
ctgttgatggacaaagacgaattgtccaaagtatggatcttaaggaaattcatggacgat
atgaactcagcagaagccatggaattcttactaggcaagatgaaaggaaccagaaacaat
gaggagtttttaatctcaatgaacggttaa
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