Reichenbachiella agarivorans: N6H18_09415
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Entry
N6H18_09415 CDS
T08483
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rek
Reichenbachiella agarivorans
Pathway
rek03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rek00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N6H18_09415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rek03019
]
N6H18_09415
Enzymes [BR:
rek01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
N6H18_09415
Messenger RNA biogenesis [BR:
rek03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
N6H18_09415
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
SNF2-rel_dom
Helicase_C_2
Cas3-like_C_2
RCN2_N
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
UXP30572
UniProt:
A0ABY6CJ78
LinkDB
All DBs
Position
complement(2261529..2262818)
Genome browser
AA seq
429 aa
AA seq
DB search
MANNVESFSDFKLNKQILNAIKDAGYEHPTPIQQKAIPLVLAGHDIMGIAQTGTGKTAAF
VLPLLMKLKYAQGDAPRAMILAPTRELAIQIEENVKKYATYMEIRHTAIYGGTGAKVQIE
AFENGMDLIVATPGRFMDLYRKQVFKTKEIKTLIIDEADKMMDMGFMPQIRQILEIIPVK
RQNLLFSATMPESVIKLSEEFLEFPEKVEVSPQSSTVDTIDQALYYLPNFKSKINMLDHL
FENEDFSRVIIFVKTKTNADNIYKFIERKITKSVKVIHGNKAQNTRLNSIDSFKEGETRI
LVATDVAARGLDVSLVSHVINFDVPLIYEDYVHRIGRTGRANNKGIALTFCNQAEKYHID
KIEQLIGRSIEVVPVPPEVTIEKTPFVEQQVMLRELDFLKKKDDPEYKGAFHDKKQRIPT
AKKKQSKRK
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atggctaataacgtagaaagtttttccgatttcaagttgaacaagcagatactaaatgcc
atcaaggacgcagggtacgaacatcccacaccgattcagcagaaagcaatccccctcgtt
ttggctggacatgacatcatgggtattgctcaaacaggtactggcaaaactgctgcattc
gtattgcctctactcatgaaactcaagtatgcacaaggagatgctcctagagcaatgatc
ctagctccaacccgtgagttagccattcagattgaagaaaatgtcaaaaaatacgccacc
tacatggagatcaggcatacagcgatctatggagggacaggtgccaaagttcagatcgaa
gcgtttgaaaacggcatggacttgatcgttgctacgccaggcaggttcatggatctatac
agaaagcaagttttcaaaaccaaagaaatcaaaacgctgatcatcgatgaggctgacaaa
atgatggatatgggtttcatgccacagattcgtcaaatcttggaaataatccctgtcaag
aggcaaaatctcctcttctcagcgaccatgcccgaaagtgtgatcaagttgtctgaggaa
ttcctagaattcccagaaaaagtagaagtatcacctcagtcctccacagtcgataccata
gatcaggcactctactatctccccaacttcaagtccaagatcaacatgctggatcacctg
ttcgagaatgaagattttagtcgggtcattatttttgtcaagacgaaaaccaatgcggac
aatatctataagttcatagaaagaaaaatcaccaagtctgtcaaggtaatccacggcaac
aaggcacaaaacacgcgattgaattctattgactcgttcaaagaaggcgaaacaagaatc
ttggtagcaacagacgtggcagctagaggactagacgtatcactcgtatctcatgtgatc
aattttgatgtaccattgatatatgaagactatgtccacagaatcggtagaacaggacga
gccaacaacaagggaattgcattgaccttttgtaaccaagcagagaaataccacattgac
aaaatagaacagttgattggtagatccatagaagttgtccctgtcccaccagaggtgacc
atcgaaaagacgccttttgtcgagcaacaagtaatgttgcgagaactggacttcctcaaa
aagaaagatgacccagaatataagggggcatttcatgacaaaaaacagagaattcccact
gcgaagaaaaagcaaagtaaacgaaaatag
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