Reichenbachiella agarivorans: N6H18_16455
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Entry
N6H18_16455 CDS
T08483
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rek
Reichenbachiella agarivorans
Pathway
rek03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rek00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N6H18_16455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rek03019
]
N6H18_16455
03400 DNA repair and recombination proteins [BR:
rek03400
]
N6H18_16455
Enzymes [BR:
rek01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
N6H18_16455
Messenger RNA biogenesis [BR:
rek03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
N6H18_16455
DNA repair and recombination proteins [BR:
rek03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
N6H18_16455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
HemN_C
SNF2-rel_dom
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UXP31938
LinkDB
All DBs
Position
complement(3936186..3938102)
Genome browser
AA seq
638 aa
AA seq
DB search
MATPHDILKQYWGYEDFRPMQLDIIESVLAGKDTLALLPTGGGKSICFQVPALMLEGVCL
VISPLVALMNDQVYQLKKRGIKAAALYSGLPNREIDVLLDNCVQGQVKFLYVAPERLTSD
LFVARVKQMNVSLLAVDEAHCISQWGYDFRPSYADIAQVYDILPAVKKIALTATATKDVK
QDICEKLSFVNPQIFQKSFARKNLSYSVFDLENKGPKMLEILTNVKGSAIVYVRSRKETE
NVAKFLYQKGISSDFYHAGLAPDVRQKKQEEWIKNIRRVMVCTNAFGMGIDKPDVRIVIH
LDLPDSLESYYQEAGRAGRDERNAYAILLYNATDVFNLERSEKLRNPSLEYVERIYQALA
NYYKLATGSSEWQSFDFDLKAFSYQYNLQAMEVYHTIKKLQEMGLLLLSENSSRGSSLTI
NVSNKEIYKFVIANARYDALFKALLRLYGGELYLDFMTISEFELAKVSQDSKSEVIKKLN
FLSQNGMVIYDPLKTKPQLTYLMPRQEQSALKRYYRLTEPRQEVIKQKTQAMVAYTQNRT
GCRTRIFQEYFDEVVYLNCGVCDVCIKAKKEEGFEVEIEKAQRAILHALETKKRQTLAAL
KQSSGQHNDFVLTEAIRGLMDDGIVYLNSDDLIEMVPR
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
ttggctactccacacgacatactcaaacaatactggggttacgaggattttcgtcccatg
cagctggacatcatcgagtctgtgttggcgggcaaggacaccttggctctcttgccaact
ggaggaggtaaatccatttgttttcaggtgccagcattgatgttggaaggtgtatgtttg
gtgatttctccattggtcgctctgatgaatgatcaagtctatcaattgaaaaaacgtgga
atcaaagctgccgcgttgtattcaggcttgcccaatcgcgaaattgatgtattgctagac
aattgcgtgcagggtcaggtgaagtttctctatgtagcgccagagcgattgacttcagat
ctctttgtcgctcgggttaagcaaatgaatgtgagcctattggcggtggatgaggcgcat
tgcatctcgcagtggggctatgactttcgcccatcttatgcagacattgctcaggtgtat
gacatcctcccagccgtcaagaagattgcgttgactgctactgcgaccaaggatgtcaag
caggatatctgtgaaaagctaagctttgtcaatccacagattttccaaaagagctttgca
cgtaagaatttatcctactcggtgtttgatctggagaacaaaggaccaaaaatgctggag
attctaaccaatgtcaaaggcagtgccatcgtctatgtgaggagccgcaaggaaacggaa
aatgtagccaaatttctctaccaaaagggaatctcatcggacttttaccacgcagggcta
gcgccagatgtgaggcaaaagaagcaagaggagtggatcaaaaacatcaggagggtgatg
gtctgtaccaatgccttcgggatggggatcgacaagcctgatgtgcggatcgtgattcat
ttggatctcccagattctttggagtcctactatcaggaagcgggacgtgcgggtcgtgat
gagcgaaatgcctatgcgatcttgctgtacaacgccacagatgtattcaacctggagcga
agtgagaaactgaggaatccttccctagaatatgtcgagcggatctaccaagcgcttgcc
aattattacaaattggccactggcagtagcgaatggcagagttttgattttgatctcaag
gcgttttcctatcagtacaacctccaagccatggaggtgtatcataccatcaaaaaattg
caggagatggggctgctcttgctcagcgaaaactcctcacgtggcagcagtctgacgatc
aacgtgtccaacaaggagatctacaagttcgtgattgccaatgcccgctacgatgctttg
ttcaaagccctattgcgcctgtatggaggggagttgtatttggacttcatgacgatctct
gagttcgagttggccaaggtgagtcaggattctaagagtgaggtgatcaagaagctgaat
tttctgtcccaaaatggaatggtaatctacgatccgttgaagaccaaaccacagttgacc
tacttgatgcctcgacaggagcagtctgcattgaagcgatactatcgactcaccgaaccc
cgacaggaggtaatcaaacagaaaacacaggccatggtcgcctacacccaaaacagaaca
ggctgtcgcacgaggatattccaagagtattttgacgaagtagtatatctcaactgcggt
gtctgcgatgtctgcatcaaagccaagaaggaggaggggtttgaggtggagattgaaaaa
gcccaacgagccattctccatgcactagaaaccaaaaaaagacaaactctggcagcactc
aaacaatcatcaggacagcacaatgactttgtactcaccgaggcgattagaggcttgatg
gatgacgggatcgtctatttgaatagcgatgatctgatcgagatggttccgaggtaa
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