Rhizobium etli bv. mimosae Mim1: REMIM1_CH00027
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Entry
REMIM1_CH00027 CDS
T02778
Name
(GenBank) double-strand break repair helicase AddB type protein
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
rel
Rhizobium etli bv. mimosae Mim1
Brite
KEGG Orthology (KO) [BR:
rel00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rel03400
]
REMIM1_CH00027
Enzymes [BR:
rel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
REMIM1_CH00027
DNA repair and recombination proteins [BR:
rel03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
REMIM1_CH00027
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
AGS19914
LinkDB
All DBs
Position
complement(25929..29123)
Genome browser
AA seq
1064 aa
AA seq
DB search
MADRHQPRILTIPAGLPFLKTLATTLCDGRLTPLFRHESDDPLSLARVTIYLPTRRAVRV
LRSEFVDLLGGRSAILPVIRPLGETDDDSGYFEEALPATIDLAQPLSNTARLVELARLIL
AWRNKLPEIVRHIHSDSPLVAPASPADAIWLARNLAELIDSIETEDLDWTELSKLDTGDY
AAWWQLTAEFLQIASAFWPERLSELGKSSPARHRNAILRAEATRISATKPAGPIIIAGST
GSVPATTDLIAAVANLPEGVIVLPGLDLSMPERHWQMVAPEPLPGQHSNPASRSHPQYGL
SSLLKRLRLTRGDISLLDRPEADLNRRAEILSRALAPAEATSDWGAWKGALPEGALDSAF
ADVSLIEAANEREEATAIAIALRLALERPGRDGESRAALITPDRNLARRVMAELSRFGIL
ADDSAGTPLSATPQGTLLQLLLEAALRPGDPVAIVSLLKHPLARFGLERDALISATEALE
LLALRGGVAEVDISALELLLTHQLGEQVLDRHAPQWRKALPAEAANAASELARRVTRATQ
PLASALVRHRPEERGKTARFTLSEWAERTGRSLEAVAADPHGNLADLWSHEAGDALASLL
GEVIDTDGQIEADGPQWIDIMAALAAGHAVKPRALNHPRLFIFGTLEARLQSVDTLILGG
LNEGSWPGQSANNPFIPRMMKTEIGLEPPERRIGQLAHDFEMANGTRHLIYSRALRQGST
PTVASRWLQRLLALGGEAFEAALRGRGNRYLQWAGLIDRGEAQVPAQRPSPKPPLALQPK
SYSFSEVGRLRRDPYAIYARRILRLDPVDAFNRDPGAAERGTLYHTIIDRFIREAHVAGT
PEAAAAMEWILTELFDMEKLPPHIDAVWRPRFREVARAFLEWEAGRRPAIRRTLTEVRGG
VELEAINIRLNGVADRIDITGPGAADIIDYKTGYNPSPAQARALLDPQLALEAAALSAGA
FRDAGSLIPQDLLYVRLRPGRRFQVDTVNNENSARSDKAKSAMDLAGDSVDQLIKFVSLL
QSGKKGFTSRLIPAQQFDFGGDYDHLARVSEWSTAETEEGGSDE
NT seq
3195 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccggcaccagccacgcatcctgacgatcccggcgggcctgcccttcctgaaa
acgctggcgacaacgctttgcgacgggcgcctgacgccgctcttccggcatgagtccgat
gatccgctgtcgctcgccagggtgacgatctacctgccgacccggcgcgccgtgcgtgtg
cttcgttcggaattcgtcgacctgcttggcggccgatcggcgatcctgccggtgatccgt
cctctcggcgaaaccgatgacgacagtggctatttcgaagaggcactgccggcaaccatc
gatctcgcccagccgctgtcgaataccgctcggctcgtggaattggcacggctgatcctt
gcctggcgaaacaagttgccggagatcgtccgtcatattcattcggactcgccgctcgtt
gcgccggccagcccggcggatgcgatctggctcgcccgaaacctcgcggagctgatcgat
tccatcgaaaccgaggatctcgactggacggaactgtcgaagctcgacaccggcgactac
gcggcctggtggcagctgacggcggagttcctgcagatcgccagcgccttctggccggag
cggctttccgagcttggcaagtcttcgccggcgcggcacagaaacgccattctgcgggca
gaagcaaccaggatttcggcgacgaaacctgccgggccgatcattatcgccggttcaacg
ggttcggttcctgccacgaccgatctcatcgccgccgttgcaaatctgccggaaggcgtg
atcgtccttccaggcctcgatctctccatgcccgaaaggcattggcaaatggtagcgccg
gaaccgctacctggccagcattccaatccggccagccggagccatccgcaatatggcctg
tcgtcgctgctgaaaaggttgaggctgacacgaggcgacatcagcctgcttgacaggccg
gaggccgatctcaatcggcgcgccgaaatcctgtcgcgcgcgctcgccccggcagaggcg
accagcgactggggagcctggaagggcgcgctgcccgagggagcgctggattcagccttt
gccgatgtttcgctgatcgaagccgccaatgagcgcgaggaagcaaccgcgattgccatc
gcactccggctggcattggaaaggccgggacgggacggcgaaagccgggcagcgctgatc
acgccggaccgcaatctcgcccgtcgggtgatggccgaactttcccgcttcgggatcctc
gccgacgattcggccggcaccccgctttcggccacaccgcaaggcaccttgttgcaactg
ctgctggaggcggcgctgcggccgggcgatccggtggcgatcgtgtcactgctcaaacat
ccgctggcgcgcttcggcctcgagcgcgacgccctgatttctgcgaccgaggcgctcgag
ctgttggcactgcgcggcggcgtggcggaggtggatatcagtgcgctggagttgctcctg
acccaccagctcggcgaacaggtcctcgaccgacacgcgccgcaatggcgaaaggcgctg
cccgccgaggcggccaatgccgcatccgagcttgcccgccgggtcacccgcgcaacacag
cctcttgcttccgcgctggtccggcaccgaccggaggagcgcggcaagacggcgcgtttc
acactgtccgaatgggcggagcggaccggccgctcgctcgaagcggtcgcggcagatccg
cacggcaatcttgccgatctctggtcgcacgaggcaggcgacgcccttgcctcgcttctt
ggcgaagtgatcgacacggatggccagatcgaggccgacggaccgcaatggatcgacatc
atggcagcgctcgccgccggccatgccgtgaaacctcgggcgctcaaccatccccgcctc
ttcatcttcggcacgctcgaagcccgcttgcagagcgtcgacacgctgatcctcggcggg
ttgaacgaaggctcctggccagggcagagcgcaaacaatcccttcattccacgcatgatg
aagacggagatcgggctcgaaccgccggagcggcgcatcggccagctggcgcatgatttc
gagatggcgaacggcactcgccacctgatctattcgagagcgctgcgccaaggttcgaca
ccgaccgtcgcctcacgctggctgcagcggctgctggcgctcggcggagaggcatttgaa
gcggcattgagagggcgcggcaaccggtatctgcaatgggccggtctcatcgatcgggga
gaggcccaggtaccggcgcagcggccctcgccgaaaccgccgctggcgctgcagccgaaa
tcctattccttcagcgaggtcggacggctgcgccgcgatccttatgcgatttatgcccgt
cgcatcctgcggctcgatccggtcgacgcgttcaaccgggatccgggagcggccgaacgc
ggaacgctctatcacacgatcatcgaccggttcatccgcgaagcccatgtggctggcacg
ccggaggcggcagcggcgatggagtggatcctcaccgagcttttcgacatggagaagctg
ccgccacatatcgatgccgtctggcggccgcgctttcgcgaagtggcccgcgccttcctc
gaatgggaggccggacggcgtcccgccatccgcaggacgctgacggaagttcgcggcggc
gtggagctggaggcgatcaatatccggctgaacggcgttgcggaccggatcgatattaca
ggaccgggagcggccgatatcatcgactacaagaccggctacaacccctcaccggcacag
gcccgcgcgcttctcgatccgcagctcgcgctggaagcggcggctttgagcgccggcgcc
ttccgcgatgccggcagtctcatcccgcaggatctgctgtatgtccgtctgcgtccggga
cgccggttccaggtcgatacggtgaacaacgagaattcggcccgcagcgacaaggcgaaa
tcggcgatggaccttgccggggactcggtcgaccagttgatcaagttcgtcagtttgctg
cagtccggcaaaaagggcttcacctcgcggctcattccggcgcagcaatttgatttcggc
ggcgactatgatcatctcgcccgcgtctccgaatggtcgacggccgagactgaggaaggc
ggcagcgatgagtga
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