Rhizobium etli bv. mimosae Mim1: REMIM1_CH00115
Help
Entry
REMIM1_CH00115 CDS
T02778
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
rel
Rhizobium etli bv. mimosae Mim1
Pathway
rel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
REMIM1_CH00115 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rel03019
]
REMIM1_CH00115 (pnp)
03016 Transfer RNA biogenesis [BR:
rel03016
]
REMIM1_CH00115 (pnp)
Enzymes [BR:
rel01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
REMIM1_CH00115 (pnp)
Messenger RNA biogenesis [BR:
rel03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
REMIM1_CH00115 (pnp)
Transfer RNA biogenesis [BR:
rel03016
]
Prokaryotic type
tRNA degradation factors
REMIM1_CH00115 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
Motif
Other DBs
NCBI-ProteinID:
AGS19992
UniProt:
S5SCN1
LinkDB
All DBs
Position
complement(119670..121808)
Genome browser
AA seq
712 aa
AA seq
DB search
MFDTHTVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLT
VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPEGYKNDTQVVVTVVQH
DLENNPDILSMIASSAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESSLDLVVA
GTYDAVLMVESEAKELPEDVMLGAVMFGHKGFQPVLDAIIKLAEVAAKEPRDFQPEDYSE
LEGEMLKHFEAELREAYKITQKADRYAAVDAVKAKVKAHFLPEEGEAKYTAEEVGAIFKH
LQAKIVRWNILDTKSRIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTG
EDEQYVDSLTGMYKERFLLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRAIRPMLPSAE
QFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFAVLS
DILGDEDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKVALGQAKGGRAHILGEMAK
AITESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTVKIAS
SSGKEIEAARKWIHSIVAEPEIGQIYEGTVVKTADFGAFVNFFGARDGLVHISQLASERV
AKTTDVVKEGDKVWVKLLGFDERGKVRLSMKVVDQATGQEIPNEKKKEEAAE
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atgtttgatacacacacagtggaaatcgagtgggccggccgcccgctgaagctcgaaacc
ggcaagatcgcccgtcaggccgacggcgcggttctcgccacttatggtgagaccgttgtt
ctcgccaccgtcgtctcggccaaggcgccgaagcccggtcaggacttctttccgctgacc
gtcaactaccaggaaaagacctacgcggccggcaagatccccggcggctatttcaagcga
gagggccgcccgagcgaaaacgagaccctcgtttcccgcctgatcgaccgcccgatccgc
ccgctcttcccggaaggctacaagaacgacacgcaggtcgtcgtcaccgtcgtccagcac
gaccttgaaaacaatcccgacatcctgtccatgatcgcctcttcggcggcgctgacgctt
tccggcgttcccttcatgggcccggtcggcggcgcacgcgtcggctacatcaatggcgaa
tatgttctcaacccgcatcttgacgagatggatgagtcgagcctcgacctcgtcgtcgcc
ggcacctacgacgccgtgctgatggtcgagtccgaagccaaggaactgcccgaagacgtc
atgctcggcgctgtcatgttcggccacaagggcttccagcctgtgctcgacgcgatcatc
aagctcgccgaagtcgccgccaaggagccgcgcgacttccagccggaagactattccgag
ctcgaaggtgagatgctgaagcatttcgaagccgaactccgcgaagcctacaagatcacc
cagaaggccgaccgctacgccgcggtcgacgccgtcaaggcaaaggtcaaggctcacttc
cttcccgaggaaggcgaagccaagtatacggccgaagaagtcggcgcgatcttcaagcac
cttcaggccaagatcgtccgctggaacatcctcgacaccaagagccgcatcgacggccgc
gaccttgaaaccgttcgtccgatcgtttcggaagtcggccttctgccgcgcacgcacggt
tcggcgctcttcacgcgcggcgaaacgcaggcgatcgtggttgccacgctcggcaccggc
gaagacgagcagtatgtcgacagtctgaccggcatgtacaaggaacgcttcctgctccat
tacaacttccctcccttctcggttggtgagaccggccgcatgggctccccgggtcgccgc
gagatcggccacggcaagctcgcttggcgtgcgatccgtccgatgctgccgtcggctgag
cagttcccctacacgctgcgcgtcgtttccgagatcaccgaatccaacggctcgtcctcg
atggcaaccgtctgcggcacgtcgctggcgctgatggatgcaggtgtcccgctcgcaaag
ccggtagccggtatcgccatgggcctgatcctcgaaggcgatcgtttcgccgtcctctcc
gacattctcggcgacgaagatcatctcggcgatatggacttcaaggttgccggtacggcc
gatggcatcacttcgctgcagatggacatcaagatcgccggtatcaccgaagagatcatg
aaggtcgctctcggtcaggccaagggcggccgcgcccatatcctcggtgaaatggccaag
gccatcaccgaaagccgcggccagctcggcgaattcgctccgcgcatcgaagtcatgaac
attccggtcgacaagatccgcgaagtcatcggctccggcggcaaggtcatccgcgaaatc
gtcgaaaagaccggcgcgaagatcaacatcgaggacgacggcaccgtcaagatcgcctcc
tcttccggcaaggaaatcgaagcggcccgcaagtggatccattcgatcgtcgccgagcct
gaaatcggccagatctatgaaggcactgtcgtcaagaccgccgacttcggcgccttcgtc
aactttttcggcgcccgcgacggcctcgtccatatctcgcagctcgcttccgagcgcgtc
gccaaaacgactgacgtcgtcaaggaaggcgacaaggtctgggtcaagctgctcggcttc
gacgaacgcggcaaggttcgcctgtcgatgaaggttgtcgaccaggccaccggccaggag
atcccgaacgagaagaagaaggaagaagcggccgaataa
DBGET
integrated database retrieval system
