Rhizobium etli bv. mimosae Mim1: REMIM1_CH00118
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Entry
REMIM1_CH00118 CDS
T02778
Symbol
truB
Name
(GenBank) tRNA pseudouridine 55 synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
rel
Rhizobium etli bv. mimosae Mim1
Brite
KEGG Orthology (KO) [BR:
rel00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rel03016
]
REMIM1_CH00118 (truB)
Enzymes [BR:
rel01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
REMIM1_CH00118 (truB)
Transfer RNA biogenesis [BR:
rel03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
REMIM1_CH00118 (truB)
Prokaryotic type
REMIM1_CH00118 (truB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
TruB_C
Zf-C2H2_ZNF451_5th
Motif
Other DBs
NCBI-ProteinID:
AGS19995
LinkDB
All DBs
Position
complement(123508..124440)
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AA seq
310 aa
AA seq
DB search
MSKPRKPKGRPISGWLILDKPMDFGSTEAVSKLKWLYKAQKAGHAGTLDPLASGMLPIAL
GDATKTVPYVMDGRKIYEFTVSWGEERATDDLEGDVTQSSERRPTEQQIRDILPRYIGTI
SQVPPQFSAIKIAGERAYDLARDGEAVEIPSREVEIFRLTLLGCRDANTAHFEVECGKGT
YVRALARDFGRELGCYGHISGLRRTFVAPFSEDAMVPLANLVALEAIEDMDERLAALDAL
LIDTCEALSALPHLVINDDQAHRLKMGNPILVRGRDAPIAESEAYATARGRLIAIGEIGQ
GEFRPKRVFA
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaaccacgcaaacccaagggccggccgatttccggctggctgatcctcgacaag
ccgatggatttcggctcgacggaagctgtttccaagctcaaatggctctacaaggcgcag
aaggccggccatgcggggacgcttgacccgctcgcgtccggcatgctgccgatcgcgctc
ggcgatgctaccaagaccgttccctatgtgatggacggccggaaaatctatgagttcacc
gtcagctggggcgaggagcgagccaccgacgatctcgaaggcgatgtgacgcagagctcg
gaaaggcgccccaccgagcagcagatccgcgatatccttccccgctacatcggcacgatc
agccaggtgccgccgcaattttctgccatcaagatcgcgggtgaacgcgcctatgatctg
gcgcgcgacggggaagccgtcgagattccttcacgcgaagtcgagatattccgactgact
ctgcttggctgccgggatgccaataccgcgcatttcgaagtggaatgcggcaagggcact
tatgtccgggcgctcgctcgcgatttcggccgcgagctcggctgctacggccatatatca
ggcctgcggcgcaccttcgtcgcgcccttttcggaagacgccatggtgccgcttgcgaac
ctggtggcgctcgaagcgatcgaagacatggacgagcggctcgccgccctcgacgcattg
ctgatcgacacgtgcgaagcgctttcggcgctgcctcacctcgtcatcaacgacgaccag
gcgcaccggctgaagatgggcaatccgatcctggtgcgcggccgcgatgcgccgattgcc
gaaagcgaagcctatgcgacggcccgtggccggctgatcgcgatcggtgagatcggccag
ggcgaatttcgcccaaagcgggttttcgcctaa
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