Rhizobium etli bv. mimosae Mim1: REMIM1_CH01661
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Entry
REMIM1_CH01661 CDS
T02778
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
rel
Rhizobium etli bv. mimosae Mim1
Pathway
rel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
REMIM1_CH01661 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rel03019
]
REMIM1_CH01661 (rnr)
03016 Transfer RNA biogenesis [BR:
rel03016
]
REMIM1_CH01661 (rnr)
Enzymes [BR:
rel01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
REMIM1_CH01661 (rnr)
Messenger RNA biogenesis [BR:
rel03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
REMIM1_CH01661 (rnr)
Transfer RNA biogenesis [BR:
rel03016
]
Prokaryotic type
tRNA degradation factors
REMIM1_CH01661 (rnr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
FaeA
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
AGS21484
LinkDB
All DBs
Position
complement(1678918..1681287)
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AA seq
789 aa
AA seq
DB search
MSRTPRDRTNLAGKRPGKIGRAGRDVSAVEPLNIVHGTLPSREVILRFIADHPQKASKRE
LAKAFGLKGDSRVELKHMLQELEQEGMLQKSRKSLIRPGALPPVTVLDITTRDKDGDLIG
RPAEWPEEQGVAPAVAIRQQSPAGRQKGKAPVAGLGDRILAKIFPAVDRGGPAYTARIIK
VIDRRRGAAMGVFRSAPGGGGRLLPIERRGEEMVIDPDYTGGAEDGDLVEIEVARLGRFG
LPRAKVLSVVGSVGSEKAISMIAIHAHGIPHVFPPAVIAEAEAAKPATMSHREDWRDVPL
ITIDPADAKDHDDAVYAVHDPSPDNPGGVIVTVAIADVSWYIRPNSPLDREALKRGNSVY
FPDRVVPMLPERISNDLCSLKEGVDRPALAVRMSFSGEGRKIGHTFHRIMMKSAGKLSYQ
QAQAAIDGRPDDKTGPMLETILKPLWHAYGVMKRGRDRRQPLELDMPERKILLKPDGTVD
RVFVPPRLDAHKLIEEMMIQANVCAAETLEKKRQPLVYRIHDAPTLAKQEVLREFLATLG
ISLAKGGNVRANSFNGILAKAEGTAHQTMVNEMVLRSQSQAIYSPENIGHFGLNLMKYAH
FTSPIRRYADLIVHRALVGSLGLGEGGITPDEEASLDDIAAEISTFERRAMAAERETIDR
LIAHHLSTRVGEEFAGRVSGVTKSGLFITLPDYGADGFVPISTLGTDYFIYDEAHQALSG
EKTGLGYRLGDSVTVKLAEAIPLAGALRFEMLSEGREMPTAVRSFHKAGRRDRGQVRKKP
GTRPPRGRR
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
gtgagcaggacaccgcgcgacagaacgaacctcgcgggcaagcgcccgggcaagatcggc
cgcgccggcagggatgtttccgccgtcgaaccgctgaacatcgtccacggcacgctgccc
tcgcgcgaggtgattctgcgtttcattgccgatcatccgcagaaggcttccaagcgtgaa
ctcgccaaggcgttcggcctgaaaggcgacagccgcgtcgagctcaagcacatgctgcag
gagctcgaacaggaaggcatgctgcaaaagagtcgcaagtcgctcattcgtcctggcgct
cttccgcccgtcaccgttctcgacatcacgacgcgtgataaggacggcgacctgatcggc
cggccggcggaatggccggaggagcagggtgttgcaccggccgtcgccatccgtcagcaa
tcgcccgcaggccgccagaaaggcaaagcgcccgtcgccggcctcggcgaccgtatcctg
gcgaagatcttccctgccgtcgatcgcggcgggccagcttatacggcgcgtatcatcaag
gtgatcgataggcgccgcggtgcggcgatgggcgtcttccgcagcgcgcccggcggcggc
ggccggctgctgccgatcgaacggcgcggcgaagagatggtaatcgatcccgactatacc
ggcggcgccgaggacggcgacctggtcgagatcgaagtcgcgcgcctcggacgtttcggc
ctgccgcgtgccaaggtcctctccgtcgtgggctcggtcggctccgaaaaggcgatctcg
atgatcgcgatccatgcgcacggcatcccgcacgtcttcccaccggccgtgatcgccgag
gcggaggctgccaaacccgccacgatgtcgcatcgggaggattggcgcgacgtgccgctg
atcaccatcgacccggccgacgccaaggaccacgatgacgcagtttacgccgtacacgac
ccctcgcccgacaatcccggcggcgtcatcgtcactgttgcgatcgccgacgtctcctgg
tatatccgccccaattcgccgctcgaccgcgaagcgctgaagcgcggcaactcggtctat
ttccctgatcgcgtcgtgccgatgctgccggagcgcatctccaacgatctctgctcgctg
aaggaaggtgtcgaccgcccagcgctcgccgtgcgcatgagcttctcaggcgaaggccgc
aagatcggccatacgtttcatcgcatcatgatgaagagtgccggcaagctctcttatcag
caggcacaggcggcgatcgacggaaggccggatgacaagaccggaccgatgctcgagacg
atcctgaaaccgctctggcacgcctatggagtaatgaagcgcggacgcgaccggcgccaa
ccactggaactcgacatgccggagcggaagatcttgctgaagccagacggcaccgtcgac
cgggtcttcgtgccgccgcggctcgatgcgcacaagctgatcgaagagatgatgatccag
gcgaatgtctgcgccgccgaaacgcttgaaaagaagcgtcagccattggtctaccgcatc
catgacgccccgacccttgccaagcaggaagtcttgcgcgaattcctggcgacactcggc
atctcgcttgccaagggcggcaatgtgcgcgccaacagcttcaacggcattctcgcaaaa
gccgaaggcacggcgcatcagaccatggtcaacgaaatggtgctgcgctcgcagagccag
gcaatctacagtccggagaatatcggtcacttcggcctcaatctgatgaaatacgcccac
ttcacatcgccgatccgccgctacgccgatctcatcgtgcatcgcgcgctcgtcggttcg
ctcggcctcggcgaaggcggcatcacgcccgacgaagaagcctcactcgacgatatcgcc
gccgagatctcgaccttcgagcgccgggcgatggcggccgagcgcgagaccatcgaccgc
ctgatcgctcatcatttgagcacccgcgtcggcgaggagttcgccggccgcgtctccgga
gttacgaaatccgggctgtttatcaccttgccggattatggcgccgacggtttcgtccct
atatctacactcggtaccgattatttcatctatgacgaggcgcatcaggcgctctcgggt
gaaaagacgggcctcggctatcgtcttggcgacagcgtcaccgtgaagcttgcggaagca
atcccgcttgctggcgcgctgcgtttcgagatgctgagcgaaggacgcgagatgccgacg
gcggtgcgttccttccataaggccggccgccgcgacaggggccaggtccgcaagaaaccg
ggaacgcgtcccccgcgcggacgccgctaa
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