Rhizobium etli bv. mimosae Mim1: REMIM1_CH01669
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Entry
REMIM1_CH01669 CDS
T02778
Name
(GenBank) ribonuclease E/G protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rel
Rhizobium etli bv. mimosae Mim1
Pathway
rel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
REMIM1_CH01669
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rel03019
]
REMIM1_CH01669
03009 Ribosome biogenesis [BR:
rel03009
]
REMIM1_CH01669
Enzymes [BR:
rel01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
REMIM1_CH01669
Messenger RNA biogenesis [BR:
rel03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
REMIM1_CH01669
Ribosome biogenesis [BR:
rel03009
]
Prokaryotic type
rRNA processing factors
REMIM1_CH01669
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
CDC45
zf-CCHC
Motif
Other DBs
NCBI-ProteinID:
AGS21492
UniProt:
S5SH78
LinkDB
All DBs
Position
complement(1690824..1693709)
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AA seq
961 aa
AA seq
DB search
MADKMLIDASHEEETRVVVVRGNRIEEFDFESQHKKQIRGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFAEIHPDYYQIPLADRQALLRAEAEEHRRDEDVEHVETAPMVDLSTQDQP
DVGIVSAEAPEPVVAADEATTEEIAAAPEIVAPPAVAEEAPAKKAKPRRSRKKVAETTAT
EDAVPTDVEAEGASTVDNDDDTPAGGTMAAMVETDTISEDIDTSKRRHDDDDDDDDHGEE
EVIESVGAEDAMEEVPDRVQRKPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLS
LAGRYSVLMPNTARGGGISRKITNPQDRKRLKEIARMLEVPQGMGVILRTAGANRTKVEV
KRDFEYLMRLWENVRTLTLASTAPCLVYEEGSLIKRSIRDLYNKDIGEIIVAGEEGYREA
KDFMKMLMPSHAKVVQPYRDIHPIFSRSGIEAQLDRMLQPQVTLRSGGYLIMNQTEALVS
IDVNSGRSTREHSIEDTALQTNLEAAEEIARQLRLRDLAGLIVIDFIDMEEKRNNRAVEK
KLKECLKNDRARIQVGRISHFGLLEMSRQRIRASVLESTTQVCSHCGGTGHVRSQSSVAL
HVLRGIEEYLLKNTTHNITVRTTPDIALYLLNHKRQTIVDYEARFGVAIIIDADGSVGAQ
HFAIDRGEPVENPVKIESLFNFAAIPEDEDDDIVIEADEDEDEELEEKAAATERPAAARS
EGEGEGNRKRKRRRRRRGRNGNAEQPIAAGETIDEDEDGEDEGSEGDENAAAAPETRAEN
EESQRRKRRRRGKRGGRRNRAEDGSEITAEEAGEDNGDTSEGEGEEITNDIAPSEAETVE
TIAEQAGEGQAAMAAVEGAAVVTEDVKPARGRGRRKPAAPPVEEPVTEAGAVPAVEAEPE
VVEASADLATPAQEEAKPVRANRESNISSSEPTVKSTRTENGESDEGKPKKAGWWQRRGF
F
NT seq
2886 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaaaatgcttatcgatgcgtctcacgaggaagagacgcgcgtcgttgtcgtt
cgcgggaatcgcatagaagaatttgacttcgagtcgcagcacaagaagcagatccgcggc
aacatctatcttgcaaaggtaacgagggtcgagccctcgctccaggccgctttcgtcgat
tacggcggcaaccgacacggcttcctggccttcgccgaaatccatcctgattattaccag
attccgctcgccgaccgtcaggcgctgcttcgggccgaggccgaagagcaccgtcgcgac
gaagacgttgagcacgtcgaaaccgcgccgatggtcgacctttcgacccaggaccagccg
gatgtcggcatcgtgtcggcggaggcgcctgagccggttgtcgcagccgacgaggcaacc
accgaggagattgctgcagcgccggagatcgtagctccgcccgcggtcgccgaagaagcc
ccggccaagaaggccaaaccacgccgcagtcgcaagaaggtcgccgaaacaaccgcgacg
gaagacgccgttccgacagacgtcgaagcggaaggtgcttcgaccgtcgacaacgacgat
gacacccctgcgggcggcacgatggccgcgatggtggaaaccgacacgatctccgaggac
atcgacaccagcaagcgtcgccacgatgacgacgatgacgatgatgaccacggcgaagag
gaagtcatcgaatccgttggcgccgaagacgcaatggaagaagtgccggaccgcgtgcag
cgcaagccgcgcaagcagtaccgcatccaggaagtcatcaagcgccgccagatcctgctg
gttcaggtcgccaaggaggagcgcggcaacaagggtgccgctctcaccacctacctctcg
cttgcaggccgctattcggttctgatgccgaacacggcgcgcggcggcggcatttcccgc
aagatcaccaatccgcaggaccgcaagcgcctgaaggaaatcgcgcgcatgctcgaagtg
ccgcaaggcatgggcgtcatcctgcgcaccgccggcgccaaccgcaccaaggtcgaggtc
aagcgcgatttcgaatatctgatgcgcctgtgggaaaacgtccgcacgctgacgctggcg
tcgaccgccccctgcctcgtctatgaagagggctcgctgatcaagcgctcgatccgcgac
ctctacaacaaggacatcggcgagatcatagttgccggcgaggaaggctatcgtgaagcg
aaagacttcatgaagatgctgatgccgagccatgccaaggtggttcagccctaccgcgac
atccacccgatcttctcgcgctccggcatcgaagcccagctcgaccgcatgctgcagccg
caggtgacgctgcgttccggcggctacctgatcatgaaccagacggaagcgctggtttcg
atcgacgtcaactccggccgctcgacgcgcgaacactcgatcgaggacaccgcgctgcag
acgaacctcgaggccgcggaagaaatcgcccgccagcttcgcctgcgcgacctcgccggc
ctgatcgtcatcgacttcatcgacatggaagagaagcgcaacaaccgcgccgtcgagaag
aagctgaaggagtgcctgaagaacgaccgcgcccgcatccaggtcggccggatctcgcat
ttcggcctgctcgaaatgtcgcgtcagcgcattcgcgcttcggttctcgaatcgacgacc
caagtgtgctcgcattgcggcggtaccggccacgtccgttcacagtcctctgtcgccctg
catgtgctccgtggcatcgaggaatatctgctcaagaacacgacgcacaacatcaccgtg
cgcaccacgcccgatatcgcgctctacctgctcaaccacaaacgtcagacgatcgtcgat
tacgaagcgcgctttggcgtagcgatcatcatcgatgccgacggttcggtcggcgcgcag
cactttgcgatcgaccgcggcgagcccgtcgaaaacccagtcaagatcgaaagcctcttc
aacttcgcagccatccccgaggatgaggacgatgacatcgttatcgaggctgatgaggac
gaagacgaagaactcgaggaaaaggctgccgcgaccgaacgtcccgctgcggcgcgttcg
gaaggcgaaggtgaaggcaaccgtaagcgcaagcgtcgccgccgccgtcgtggccgcaac
ggcaatgccgagcagccgatagccgcgggcgagaccatcgacgaagacgaggatggagag
gatgaaggcagcgaaggcgatgaaaacgctgcagcagcgcctgagacccgcgctgagaac
gaggaatcgcagcgtcgcaagcgtcgccgccgtggcaagcgcggcggccgccgcaatcgt
gccgaggacggctcggaaataactgccgaggaagccggtgaagacaacggcgacacgagt
gaaggcgaaggcgaagaaatcacaaacgacatcgctcccagtgaagccgaaaccgtcgag
acgattgccgagcaggctggcgaaggccaggccgccatggccgcggttgaaggtgcagcc
gtcgtcaccgaggatgtgaagccggctcgcggccgcggccgccgcaaacctgccgcaccg
ccggtcgaggagccggtgacagaggcaggggcggtacccgccgtcgaggccgaaccggag
gtggtcgaagcctccgccgatctcgcaacgcccgcccaggaagaagcaaagccggttcgc
gcgaaccgcgaatccaatatttcttcctcagagccgacggtgaaatccacccgtaccgaa
aatggcgaaagcgacgaaggcaagccgaagaaagccggctggtggcagcgccgtggcttc
ttttga
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