Rhizobium etli bv. mimosae Mim1: REMIM1_CH02189
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Entry
REMIM1_CH02189 CDS
T02778
Name
(GenBank) DEAD/DEAH box type DNA/RNA helicase protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rel
Rhizobium etli bv. mimosae Mim1
Pathway
rel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
REMIM1_CH02189
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rel03019
]
REMIM1_CH02189
03009 Ribosome biogenesis [BR:
rel03009
]
REMIM1_CH02189
Enzymes [BR:
rel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
REMIM1_CH02189
Messenger RNA biogenesis [BR:
rel03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
REMIM1_CH02189
Ribosome biogenesis [BR:
rel03009
]
Prokaryotic type
rRNA helicases
REMIM1_CH02189
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
AGS21973
LinkDB
All DBs
Position
complement(2177498..2179453)
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AA seq
651 aa
AA seq
DB search
MTEFNGVVPAIAKALQKRGYAELTPVQQAMLDPALAASDALVSAQTGSGKTVAFGLALAP
TLLDGHERFGNAGAPLALVIAPTRELALQVKRELEWLYEMTGAVIASCVGGMDIRSERRA
LERGAHIVVGTPGRLCDHIRRRALDMSDLKAAVLDEADEMLDLGFREDLEFILDSAPDER
RTLMFSATVPAAIAKLAKSYQRDAVRISTAAEEKQHVDIEYRALMVAPSDRENAIINVLR
YYEATNAIVFCSTRAAVNHLTARFNNRNFSVVALSGELTQNERSHALQAMRDGRARVCIA
TDVAARGIDLPGLDLVIHADLPTNPETLLHRSGRTGRAGRKGISAMIVPLNARRKAERLL
ENAGISAAWARPPSAEEVNERDDERLLADPIFHDAPQEEEQGLVQQLLSSHGAEKLAAAF
LRLYRTNHSAPEDLIEVTVQEGGSRKRRDNAESYEPAQKGPREDFGPSVWFSVSVGRKQN
AEPRWLIPMLCRNGNVTKREIGAIKMQPEETYVEIAVASADGFQEALGPNKTLERGIRVT
RLSGTPDFSRAAAPKPYAGKSSRDERPGEAFRDERPKKKFGKGSGGGYAATDNAGQERRD
SKPWSKKPGKPGFDGPQSDKPRYDKPKFEGGKFEGKGGAGPKNKFSKKKPG
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgacagaatttaacggcgtcgttccggcgatcgccaaggcgttgcagaagcgcggttac
gccgaactcaccccggtgcagcaggcgatgctcgatccggcgctggccgcttccgacgcg
ctggtctcggcccagaccgggtccggcaagactgtcgccttcggattggcgttggcgccg
acgttgctcgacggccacgagcgcttcggcaacgccggagcgccgctcgccctcgtcatc
gccccgacgcgcgagcttgccctgcaggtaaagcgtgaactcgaatggctttacgagatg
accggcgcggtgatcgccagctgcgtcggcggcatggacatccgcagcgagcgccgagcg
ctggaacgcggcgcccatatcgtcgtcggcacgcctggccggctctgcgaccatatccgc
cgccgggcgctcgacatgtcggatctgaaggccgccgtgctcgacgaggccgacgaaatg
ctcgatctcggcttccgcgaggacctggaattcattctcgattcagcgccggacgagcgc
cggacgctgatgttttctgcaaccgtcccggcagcgatcgccaagcttgccaagagctat
cagcgcgatgcggtgcgcatcagcactgcggccgaggaaaagcagcatgtcgacatcgaa
tatcgtgcgctgatggtggccccgagcgaccgcgagaacgcgatcatcaacgtactgcgt
tattacgaagcgaccaacgccatcgtcttctgttcgacgcgtgccgccgtcaatcatctg
accgcgcgcttcaacaaccgcaatttttcggtcgtggcgctttccggcgagctgacgcag
aacgaacgcagtcatgcgctgcaggcgatgcgcgacgggcgcgcccgcgtctgcatcgca
accgacgtcgccgcccgcggcatcgatctgccgggcctcgatctcgtcatccatgccgac
ctgccgaccaatccggaaacgctgctgcatcggagcggccgcaccggccgggccgggcgc
aaaggcatcagcgccatgatcgtgccgctgaatgcacgacgcaaggccgagcgcctgctc
gagaatgccggtatttcggccgcctgggcgcggccgccctcggccgaggaagtgaacgag
cgcgacgacgagcggctgctcgccgatccgatttttcacgacgctccgcaggaggaagag
caggggctggtgcagcagcttctctccagccacggcgccgaaaagctcgccgctgccttc
ctgcgtctttatcgcaccaatcattcggcgccggaggacctgatcgaggtcaccgtgcag
gaggggggcagccgcaagcgccgcgacaatgccgaatcttatgagccggcgcagaaggga
ccgcgcgaggatttcggccccagcgtctggttctccgtctcggtcgggcgcaagcagaat
gccgagccgcgctggctgatcccgatgctctgccgcaatggcaacgtcacgaagcgcgag
atcggcgcgatcaagatgcagcccgaggaaacctatgtcgagatcgccgtagcaagcgcc
gacggcttccaggaggctctcgggccgaacaagacgctcgaacgcggcatccgcgtcacc
aggctttccggcacgccggatttcagccgcgcggcggcgccgaagccctatgccggcaag
tcgtcgcgtgacgaacggccgggcgaagccttccgcgacgagcggccgaaaaagaagttc
ggcaagggttcgggcggcggatatgctgcaactgacaatgccggccaggagcgacgcgac
agcaagccgtggagcaagaaacccggcaagcctggcttcgatggcccgcagtccgacaag
cccagatatgacaagccgaagttcgagggcggcaaatttgagggcaaaggcggcgccgga
ccgaagaacaagttctccaagaagaagcccggctga
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