Rhizobium etli bv. mimosae Mim1: REMIM1_CH02991
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Entry
REMIM1_CH02991 CDS
T02778
Symbol
sigA
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
rel
Rhizobium etli bv. mimosae Mim1
Pathway
rel02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rel00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
REMIM1_CH02991 (sigA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rel03021
]
REMIM1_CH02991 (sigA)
Transcription machinery [BR:
rel03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
REMIM1_CH02991 (sigA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
DUF5856
Relaxase_C
Phage_DsbA
DUF4351
Motif
Other DBs
NCBI-ProteinID:
AGS22746
LinkDB
All DBs
Position
complement(2960656..2962713)
Genome browser
AA seq
685 aa
AA seq
DB search
MATKVKENEDAEVERDGASDGPLLDLSDDAVKKMIKAAKKRGYVTMDELNAVLPSEEVTS
EQIEDTMSMLSDMGINVIEDEEAEEAGASGGGDDDDAGGDEDSEGGELAPSAGTALATAK
KKEPTDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQALII
WRDELNEGTTLLREIIDLETTYSGPEAKAAPQFQSPEKIEADRKAAEEKEKTRRARSGDD
DITDVGGEGLPPEEEEEDEDESNLSLAAMEAELRPQVMETLDIIAETYKKLRKLQDQQVE
QRLAATGTLSSAQERRYKELKDELIKAVKSLSLNQNRIDALVEQLYDINKRLVQNEGRLL
RLAESYGVKRDSFLEQYQGAELDPNWMKSIGNLAARGWKEFAKAENTTIRDIRQEIQNLA
TETGISISEFRRIVHMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEG
NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSR
QMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNA
LLPIDAAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIR
QIEAKALRKLKHPSRSRKLRSFLDS
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccaaggtcaaagagaacgaagacgcggaagtcgaacgcgacggcgcaagcgac
ggccctcttctcgatctttccgacgatgcggtcaagaagatgatcaaggccgccaagaag
cgcggctatgtgacgatggacgagctgaacgccgtgctgccgtccgaggaagtgacctcc
gagcagatcgaagacacgatgtcgatgctgtcggacatgggcatcaacgtcatcgaggac
gaggaagccgaagaggccggtgcttccggcggtggcgatgacgacgacgctggcggcgat
gaggacagcgaaggcggcgaactcgcgccttcggccggcactgcgcttgcgaccgccaag
aagaaagagccgaccgaccgtaccgacgacccggtgcgcatgtatctgcgcgagatgggc
tcggtggagcttctgtcgcgcgaaggcgaaatcgcaatcgccaagcgcatcgaagccggc
cgcgagacgatgatcgccggcctctgtgagagcccgctgaccttccaggcgctgatcatc
tggcgcgacgaactcaacgaaggcacgacgctgctgcgcgagatcatcgatctcgagacg
acctattccggtccggaagccaaggccgcgccacagttccagagccctgagaagatcgag
gccgaccgcaaggcggcggaagagaaggaaaagacccggcgcgcccgctccggcgacgac
gacattaccgatgtcggcggcgaaggtctgcctcccgaagaggaggaagaggacgaggac
gaatccaacctctctctcgccgcgatggaagcggaactccgcccacaggtcatggagacg
ctcgacatcattgccgagacctacaagaagctgcgcaagctgcaggaccagcaggtcgag
cagcgccttgccgccaccggcacgctgtcttccgcccaggagcgccgctacaaggagctc
aaggacgagctcatcaaggcggtcaagtcgctgtcgctcaaccagaaccgcatcgatgca
ctggtcgagcagctctacgacatcaacaagcgcctcgtgcagaacgaaggccgcctgctg
cgtctggccgaatcctacggcgtcaagcgcgactcgttcctggagcagtatcagggcgcc
gagctcgacccgaactggatgaagtcgatcggcaatctggccgcccgcggctggaaggaa
ttcgccaaggcggagaatacgacgatccgcgacatccgccaggagatccagaatctggcg
acggagaccggcatctcgatctcggaattccgccgcatcgtgcacatggtgcagaagggc
gagcgcgaagcgcgcatcgccaagaaggaaatggtcgaagcgaaccttcgcctcgtcatt
tcaatcgccaagaagtacacgaaccgcggcctgcagttcctcgacctcattcaggaaggc
aatatcggcctgatgaaggcggtcgacaagttcgaataccgccgcggttacaagttctcg
acctatgcgacatggtggatccgccaggcgatcacccgctcgatcgccgaccaggcccgc
acgatccgcattccggtgcacatgatcgagacgatcaacaagatcgtccggacctcgcgc
cagatgctgcacgagatcggccgcgagccgacaccggaagaactggccgaaaagctcgcc
atgccgctcgaaaaggtgcgcaaggtcctgaagatcgccaaggagccgatctcgctcgaa
accccggtgggcgacgaagaggattcgcatctcggcgatttcatcgaggacaagaacgcg
ctgctgccgatcgacgccgccatccaggcgaaccttcgcgagacgacgacccgcgttctc
gcctcgctgacgccgcgcgaggaacgtgtcctgcgcatgcgcttcggcatcggcatgaac
accgaccacacgctcgaagaagtcggccagcagttctcggtcacccgcgaacgtatccgc
cagatcgaagcgaaggcgctgcgcaagctcaagcatccgagccgctcgagaaagctgaga
agctttctggacagctaa
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