Rhizobium etli bv. mimosae Mim1: REMIM1_PD00220
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Entry
REMIM1_PD00220 CDS
T02778
Name
(GenBank) DNA topoisomerase I protein
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
rel
Rhizobium etli bv. mimosae Mim1
Brite
KEGG Orthology (KO) [BR:
rel00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rel03032
]
REMIM1_PD00220
03400 DNA repair and recombination proteins [BR:
rel03400
]
REMIM1_PD00220
Enzymes [BR:
rel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
REMIM1_PD00220
DNA replication proteins [BR:
rel03032
]
Prokaryotic type
DNA Topoisomerases
REMIM1_PD00220
DNA repair and recombination proteins [BR:
rel03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
REMIM1_PD00220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Top1B_N_bact
Topoisom_I
ACT
Motif
Other DBs
NCBI-ProteinID:
AGS24833
LinkDB
All DBs
Position
pRetMIM1d:251403..252431
Genome browser
AA seq
342 aa
AA seq
DB search
MNAETITELGLIYVSDTEPGIRRRRKGKGFSYVMPDGTTLSDESQRARIGALGLPPAYEN
VWICLYENGHLQATGIDARGRKQYRYHKDWQSFRSAGKFYQLIEFGQALPKIRRTVLRHL
DTGAEDVNGVLAALTTLLDEAHLRVGNQAYVRENGTYGATTLLKRHLKIVDGRIELKFRA
KGGKRVQRSLKHPRLQKILEEISDLPGRQLFVWKDDSGALKPVDSGGLNAYLAEISGVPI
SAKTFRTWAGSLAAFGLARERIVGGGRPTVKEMSEAAAEALHNTPAISRSSYIHPAIIAL
AGNDHPLIEGGSEPLRGLRAEENRLLDFLIRETELNSSAPGV
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atgaatgccgaaacaattaccgaacttggcctgatctatgtcagcgataccgaaccgggc
atccgcaggcgaaggaaaggcaagggcttcagctatgtgatgcctgacggtacaacgctt
tccgatgaatcacagcgggcgcgcatcggcgcgctcggacttccgccagcctacgagaat
gtctggatctgtctctacgagaacggtcatctgcaggcgaccggcatagacgcgcgcggg
cgaaaacaataccgctatcacaaggactggcaatcgttccgcagcgccgggaagttctac
cagcttatcgaattcggtcaggcactgcccaagatccgccgcaccgtcctgcggcatctc
gacaccggtgccgaggatgtcaacggcgtgctggcggctctgacgacactgctcgacgag
gcgcatctgcgggtcggcaatcaggcctatgttagggagaacggcacctatggcgcaacg
accctgctgaagcgacatctgaaaatcgtcgacgggcggatcgagctcaaattccgggcc
aagggcggcaagcgcgtgcagcgcagcctcaagcatccgaggctacagaaaatcctggaa
gaaatttccgaccttcccggccgccagctcttcgtctggaaggatgacagcggcgcgctg
aaaccggtcgattctggcgggctgaatgcctatctggccgaaatatcgggcgttccgatt
tccgccaagacgttccgcacttgggccggatcgctggcggccttcggtctggcccgcgaa
aggatcgtcggcggcggccggccgacggtgaaggaaatgtcggaggctgcggccgaggcg
ctgcacaatacgccggcgatctcacgctcgagctatatccatccggcaatcatcgcgctc
gccggcaatgatcatcctttgatcgagggcggcagcgagccgctgcggggcctgcgggct
gaagaaaacaggctgcttgatttcctcatacgcgagaccgaactgaactcttcagctccc
ggcgtctag
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