Rhizobium etli bv. mimosae Mim1: REMIM1_PE00324
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Entry
REMIM1_PE00324 CDS
T02778
Symbol
rpoN-2
Name
(GenBank) RNA polymerase sigma-54 factor RpoN 2
KO
K03092
RNA polymerase sigma-54 factor
Organism
rel
Rhizobium etli bv. mimosae Mim1
Pathway
rel02020
Two-component system
rel02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rel00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
REMIM1_PE00324 (rpoN-2)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
REMIM1_PE00324 (rpoN-2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rel03021
]
REMIM1_PE00324 (rpoN-2)
Transcription machinery [BR:
rel03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
REMIM1_PE00324 (rpoN-2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
AGS25411
LinkDB
All DBs
Position
pRetMIM1e:354647..356101
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AA seq
484 aa
AA seq
DB search
MKSFPSLHQRQQQSLVITPQLIESIRLLQLAHTELHQFVEQEIEKNPFLDLASNDGGAPG
DASSVSVEDLNIGVREDHVDRPAGTDMPELSSPWKSTRDTGSLPPGERPSLDEFAASTET
LHEHVAHQIALTAFTPQERLIAGALADHLEDTGYLQANIPELAKRLNIQEAYVERVLGAL
QLFDPPGVFARNLSECLEIQLRQRDRFDPAMAALVANLELLARRDFRALKRRCRVDEDDL
LDMLKEIRALDPKPGNQFQSAGSESIIPDVSVMPSPGGGWHIELNRDILPKVLINQNYYA
EVTRLTAQSSKDQSFLNECFQNASWLVRSLDQRATTILKVATEIVRHQDVFLEDGIAHLR
PLNLKTIADAIDMHESTVSRVTSNKYMLTPRGVFELKYFFTVAIPSSQGGDAHSAESVRH
QIKAMIAAETLDDVLSDDGIAARLKDTGVDIARRTVAKYREAMNIPSSAQRRREKRFVSA
AAEG
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgaagtcctttccaagccttcatcagcgtcagcagcaatcgttggttattacaccccaa
ctcatcgagtctattcgcttgctgcagctggcgcacaccgaactgcatcagttcgtggaa
caggaaatcgagaagaacccatttctcgatctggcgtcgaatgacggcggggctccaggc
gatgcatcgtcggtttcggtggaagatttgaatattggtgtgcgcgaggaccacgttgat
cggccggccggaacggacatgcccgagctgtccagtccgtggaaatcaacccgcgacaca
ggcagccttccgcccggggaaaggccttcgctagacgagtttgccgcctcaaccgagaca
ttgcacgagcacgtcgctcatcagatcgccctcaccgccttcacaccgcaggagcgccta
atcgctggggcgcttgccgatcatctggaagataccgggtatctgcaagcgaacattccg
gagctcgccaagaggctgaacatccaggaggcttatgtggagcgggttctcggggccctg
cagctctttgatccaccgggggtttttgcgcgaaatctcagcgaatgccttgagatacag
ttgcgtcagcgcgatcgtttcgacccagcaatggcagctctggtcgcaaatctcgagctg
cttgcgagacgcgattttcgggcattgaagcgtcgttgccgggtggatgaagacgacctt
ctcgacatgttgaaagaaatccgtgccctcgaccccaagcctggaaaccaattccagtcc
gcagggtcggaatccatcataccggacgtctccgtcatgccctcgcctggcggtggatgg
catatcgaacttaatcgggacatcttgcccaaggtgttgatcaaccagaattattatgcg
gaagttacccgtctgaccgcccaaagctcaaaagatcagtcattcctcaacgaatgcttt
caaaacgcgagctggttggttcgcagtctcgatcagcgcgccacgacaattctcaaggtc
gcaaccgaaatcgtgcgccaccaggatgtctttctggaagatggcattgcccatcttcgt
cctctcaatctcaagaccatcgctgacgcgatcgacatgcacgagtccactgtaagccgg
gtgacgtcgaacaaatacatgctcacgcctcgcggtgtgttcgaactcaagtatttcttc
acggtcgccatcccctcctcccaaggcggtgacgcgcactcggccgaatctgtgcgccat
cagatcaaggcaatgattgccgcagaaacgctcgatgatgtgctctccgacgatggcatc
gctgccaggctcaaggacacgggcgtcgacattgctcgccgcacagtcgccaaatatcgc
gaggcgatgaacatcccctcgtccgcgcaacgccgccgggagaagcggttcgtatcggcg
gccgcggagggataa
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