Rickettsia endosymbiont of Culicoides impunctatus: LF885_00210
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Entry
LF885_00210 CDS
T10695
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
rem Rickettsia endosymbiont of Culicoides impunctatus
Brite
KEGG Orthology (KO) [BR:
rem00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LF885_00210 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rem03021
]
LF885_00210 (rpoD)
Transcription machinery [BR:
rem03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LF885_00210 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_ner
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
SPG4
Motif
Other DBs
NCBI-ProteinID:
UCM85741
LinkDB
All DBs
Position
complement(44891..46807)
Genome browser
AA seq
638 aa
AA seq
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MTEVKKNIDEKGEAVDNLVKSAKAKGKAVTYYDINKVIPITNNISVNDLEKVISKFSEAG
VDIIEGDEDEIKLDINVDEEFKLSNNVDNEPEDDSEEENIGSTDDPVRLYLRDMGGVGLF
SREAEIEVAQDIEEGKEIMVKSLCENPISMKFFIKWHEDLANEKILLRDLIDLEANMVHE
YCSNSEENHNNDLESDNEEHEEASNLSIATIELQLLPAVIKRMEKIAKLSEELLVEAKKH
YARYPQPKGLQDNKKYAKNLHLIIVEISGIHFHSKRTEEILNRIYSLNRELVNKEGNFLK
LAEKYGVTRQSFLSEYMGAVIDENWKRQMQKNKNANWKNFLAKESDVTDQMISELRSMEM
ISGLPIIEFKKLVHTIQKGERQVLRAKKAMIEANLRLVISIAKKYANRGLQFLDLIQEGN
IGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKIIRTSRQ
MLNELGYEPTPAEIAARLSMPVDKVRKVMKIAKEPISLQNPVGDDDGSYLGDFIEDPNAI
LPLDAAIQSNLREVTTRVLATLTPREERVLRMRFGIGMNTDHTLEEVGQQFNVTRERIRQ
IESKALRKLKHPTRSKRLSSFRSGSRKHNNSSESAFGG
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atgacagaagtgaaaaagaatatagatgaaaaaggcgaagcagttgataacttagttaaa
tcagccaaagcaaaaggtaaggcagttacttactatgatataaacaaagttattccaatt
actaataatatatcagtaaatgatctagaaaaggtaatatcaaagttttctgaggctgga
gttgatattatagaaggcgatgaagatgagattaaacttgatattaatgtagatgaagaa
tttaaactatctaataatgttgataacgagcctgaagatgacagtgaagaagaaaatata
ggctcaaccgatgatccagtaagattatatttacgagatatgggcggagtagggctcttt
tctcgtgaggctgaaatagaagtagctcaagatattgaggaaggcaaagaaataatggtt
aaatcactttgtgaaaatccaatatcgatgaagttctttattaaatggcatgaagattta
gctaatgagaaaatactacttagggatttgattgatttagaagctaatatggttcacgaa
tattgtagtaattctgaagaaaatcataataacgatctggaatcagacaatgaagagcat
gaagaagctagtaatttatcaatagctactattgaattacagttattacctgctgttatc
aagcgtatggagaaaattgctaaactttctgaagagttgttagttgaagcaaaaaaacat
tatgcccgttatcctcaacctaaggggttgcaagataataaaaaatatgccaaaaattta
catttaataattgttgagatttctggcatccatttccattctaaaaggacggaggaaatt
cttaataggatatatagtttgaatagagaattagtaaataaagaaggaaattttcttaaa
ttagctgaaaaatatggcgtaactcgtcaatctttcctaagtgaatatatgggagcagta
attgatgagaattggaaaaggcaaatgcaaaaaaataagaatgctaattggaagaacttc
cttgctaaagaatctgatgtcacggatcaaatgattagcgaattaagaagcatggaaatg
attagcggtttgccaattattgaatttaaaaaattagtgcataccatacaaaagggtgaa
agacaggttcttcgggcaaaaaaagctatgatagaagctaatcttcgtctagttatctcg
attgctaaaaaatatgcaaatcgtggattgcagtttttagatttaattcaggaaggaaat
attggattaatgaaggctgttgataaatttgaatatcgtcgggggtataaattttctact
tatgctacttggtggattaggcaagctattactagagccattgctgatcaagctagaacc
atacgtattcctgtacatatgattgaaacgattaacaaaattatccgtacttctaggcag
atgctgaacgaactaggttatgaaccaactccagcagaaattgctgctcgcctttctatg
ccagttgataaagtacgtaaagtgatgaagatagctaaagagccaattagcttgcaaaat
ccagtaggagatgatgatggtagttatttgggagactttattgaagacccaaatgctata
ttaccacttgatgcagcaattcaatcgaacttacgagaggttaccactagagtattagca
actcttactcctcgtgaagaaagggttctaagaatgagatttggtatagggatgaatact
gatcatactttggaagaagtagggcagcaattcaatgttactagggaacgtattaggcaa
atagaatccaaagcactgcgtaaattaaaacatccgactagatctaaaagacttagtagc
ttccggagtggttctagaaagcacaacaattcttcagaatctgcttttggcggctaa
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