Rickettsia endosymbiont of Culicoides impunctatus: LF885_05635
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Entry
LF885_05635 CDS
T10695
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
rem Rickettsia endosymbiont of Culicoides impunctatus
Pathway
rem03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rem00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LF885_05635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rem03021
]
LF885_05635
03400 DNA repair and recombination proteins [BR:
rem03400
]
LF885_05635
Enzymes [BR:
rem01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LF885_05635
Transcription machinery [BR:
rem03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LF885_05635
DNA repair and recombination proteins [BR:
rem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LF885_05635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
DUF6298
Motif
Other DBs
NCBI-ProteinID:
UCM85453
LinkDB
All DBs
Position
1166907..1167926
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AA seq
339 aa
AA seq
DB search
MLSLNKNWNSLIKPSKIVYDSPDKNANIVKIVVEPLERGFGLTVGNAMRRILLSSLQGAA
ITSIKIPGVVHEFSAIPGVKEDLVDVVLNLKSLAIKMHSSEKKIVRLSATGPCVVTAGMI
GAGHDVEILTPNHMICTLAKGVQLEMELVCETGKGYVPAVSNVDSESAIGVIPIDALFSP
VRKVTYKVDNTRVGQVTDYDKLIMTVETNGSISPEMAIALAARILQDQLQLFITFEEQVE
DKQDKLEELSFNPALLKKVEELELSVRSQNCLKNDNIIYIGDLVIKTEGEMLRTQNFGRK
SLNEIKDILATFGLKFGMDVAGWPPENIQDLSKRYEDPY
NT seq
1020 nt
NT seq
+upstream
nt +downstream
nt
atgttatcattaaataaaaactggaactcactgatcaagccttcgaagatcgtgtatgac
agtcctgataagaatgctaatatagtaaagattgtagttgagcctttagagagagggttt
ggtttaacagtaggtaatgctatgaggaggattttgctttcttctcttcagggtgctgca
ataacttcgataaagataccaggggtggtgcatgaattttctgctatacctggtgttaaa
gaagatttagttgatgtagttttaaatcttaagtccttagccattaagatgcattcttcc
gaaaaaaagattgtaagattaagtgctactggtccttgcgtggtaactgccggtatgatt
ggagcaggtcatgatgtagagatattaactcctaatcatatgatttgtaccttggcaaaa
ggagttcaacttgaaatggaactagtgtgtgagacgggaaaaggttatgttcctgctgtg
agtaatgttgattcagaatcagctattggggtaatcccaatagatgcattatttagtcct
gtaaggaaggttacctataaagttgataatacacgtgttggtcaagttacagattatgac
aagctaattatgaccgttgaaactaatggtagtatctctcctgagatggctatagccctt
gctgctaggattttgcaagatcagttacaattatttattacatttgaagagcaagtagaa
gataaacaagataaattggaagaattatcatttaatccagccttgttgaaaaaagttgag
gaattagaattatctgtcagatctcaaaattgtttgaaaaatgataatataatttatata
ggagatcttgttatcaagacagaaggagaaatgctgagaactcaaaattttggtagaaaa
tctcttaatgagatcaaggatatattagccacttttggcttgaaatttggtatggacgta
gcaggctggcctccagaaaatattcaggatctatctaagcgttacgaagatccatattaa
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