Rickettsiales endosymbiont of Stachyamoeba lipophora: EF513_01035
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Entry
EF513_01035 CDS
T05750
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
ren
Rickettsiales endosymbiont of Stachyamoeba lipophora
Brite
KEGG Orthology (KO) [BR:
ren00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ren03032
]
EF513_01035 (gyrB)
03400 DNA repair and recombination proteins [BR:
ren03400
]
EF513_01035 (gyrB)
Enzymes [BR:
ren01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
EF513_01035 (gyrB)
DNA replication proteins [BR:
ren03032
]
Prokaryotic type
DNA Topoisomerases
EF513_01035 (gyrB)
DNA repair and recombination proteins [BR:
ren03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
EF513_01035 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
HATPase_c_3
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
AZL15146
UniProt:
A0A3S8T1S3
LinkDB
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Position
complement(232152..234557)
Genome browser
AA seq
801 aa
AA seq
DB search
MTNSNSVPKMEQEYTASSITVLKGLEAVRKRPGMYIGDTDDGSGLHHMIYEVVDNSIDES
LAGHCDLVSIILNKEGSITVSDNGRGIPTDIHQGEGVSAAEVIMTQLHAGGKFDHNSYKV
SGGLHGVGVSVVNALSVWLKLNIYRGGKEYFMSFHNGVADAPLTVVGDAGGNKGTVVTFM
PSTEIFSNIIFERSRLEQRFRELAFLNSGVRIKLVDLREEEAHEQIFYYEGGTEEFVKYL
DRTKTAVHPCIKVSGESNGIYCEVALEWNDSYHENILTFTNNIRQNDGGTHLIGFKSALT
RVINSYANSTGLLKKEKVTINGDDAREGMTAVVAVKVPDPKFSSQTKDKLVSSEVRTVVE
DMVSEKLERWLEEHPTEGKIIIGKVIEAAVAREAARKARELTRRKTALDVANLPGKLADC
QEKDPSKSELFIVEGDSAGGSAKQGRDRKFQAILPLRGKILNVERARFDKILSSDQIGTL
ITALGTGIGKEEFDLIKTRYHKIVIMTDADVDGAHIRTLLLTFFYRHMREVVDAGYLYIA
QPPLYKLKRGSSERYLQNEQALQAYLLSVVTEDAEVKASSNQLKAVELESFIKNIFKFNS
YIGFKQKYLEKQLLEALVISGLLENAQQNFAAKQARFNQIAVQMNYEPLPVVELKDNHVA
LSYVLNGKDYHFNFNQELCEQIGVSDILKLYQPIKAYFESEAMYTRKSFSCAVEIPSDFI
TQVFDNAKKGVSMQRFKGLGEMNADQLWDTTLNPQNRTLLQVKVHSNDTAEEVFTTLMGG
IVEPRKEFIQQNALKVENIDI
NT seq
2406 nt
NT seq
+upstream
nt +downstream
nt
atgacaaactcaaattcagtaccaaagatggaacaagaatatactgcaagctctattaca
gtattaaaaggtttagaagcggttcgtaaacgtccaggaatgtatattggcgatactgat
gatggttctgggcttcatcatatgatttatgaggtggtagacaactcaattgatgaatca
ctggctggtcattgcgatttagtcagtattattcttaataaagaaggatcaataaccgtt
agtgataacggccgtggtattcctacggatattcatcaaggtgaaggggtttcggcagct
gaagtaattatgactcagctacatgctggtggtaaatttgatcataattcttataaagta
tcaggtggtttacacggggttggtgtctcggttgttaatgcgttgtctgtatggcttaag
cttaatatttatcgtggtgggaaagaatattttatgtctttccacaatggtgtggctgac
gctcctttaacggtagtgggtgacgctggcggtaacaaaggaactgttgttacctttatg
ccatcaacggaaatattttcaaatatcatttttgaaagaagtaggctggagcaaagattt
agagagctcgctttcttgaattcaggagtgcgaattaaactggtggatttacgggaagaa
gaagctcatgaacaaatattttattatgaaggcggaacagaagagtttgttaaatattta
gatcgtactaaaaccgctgtacatccttgtattaaagtgagtggtgagagcaatggtatt
tattgtgaagtagctcttgagtggaatgatagctaccatgagaatattttaacttttact
aataacatccgtcaaaatgatggtggaactcacttaataggctttaaatcagcattaacc
agggtaattaatagttatgctaattcaaccggcttacttaaaaaagaaaaagtaactatt
aatggtgatgatgctagagaagggatgactgcagtagttgccgtgaaagttcccgaccct
aaattttcttcgcaaactaaagataaattggtgagttcggaagtaagaactgtagtagaa
gatatggtttcagaaaagctggaacgttggcttgaagagcatcctactgaaggcaaaatt
attatcggtaaagtgattgaggccgcagttgcaagggaagcagcacgtaaggcgcgtgaa
ttaactcgccgtaaaacggcattagatgtggctaatcttccgggaaagctagctgattgc
caggaaaaagatccaagtaaaagtgaactatttatagtagagggtgattcggcaggtggt
tcggctaaacagggtagagatagaaaattccaggctattttaccacttagaggtaaaatc
cttaacgtagaacgggctagatttgataaaattttatcctccgatcagattggaacttta
ataactgcacttggtaccggtattggtaaagaagaatttgaccttatcaaaaccagatat
cataaaattgttatcatgactgatgcagacgtggatggtgcacatatcagaaccttgttg
ttaactttcttctatcgtcatatgcgagaggtagttgatgcaggctatttgtatatagcc
caaccgccattatataaattaaagcgcggtagtagcgaaagatacttacaaaatgagcaa
gcattacaagcttatctcttaagtgtagtaactgaagatgctgaggtgaaagcgagctct
aatcaattgaaagctgtcgagttagaaagttttattaaaaatatcttcaaatttaatagc
tatataggatttaagcaaaaatatttagaaaaacaactgttagaagcattggtaatatct
ggactacttgaaaatgctcagcaaaattttgcagctaaacaagctagatttaatcaaata
gcagtacaaatgaattatgaaccattgccagtagttgagcttaaagataaccacgtagct
cttagttatgtactaaatgggaaagattatcattttaattttaatcaagaattatgcgag
caaatcggggtgagtgatattcttaaactttatcagccgattaaagcttattttgaaagt
gaggccatgtatacgcgtaaatcatttagctgcgcggttgaaattccatcagactttatt
actcaagtatttgataacgctaaaaaaggtgtgagcatgcagcgttttaaaggtcttggg
gaaatgaatgctgatcagttatgggatactactttaaatccacagaatagaacgctacta
caggttaaagttcatagtaatgatactgctgaagaggtgtttactacgctgatgggtggt
attgttgaacctagaaaagaattcattcagcaaaatgcattaaaagtagagaatattgat
atataa
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