Rickettsiales endosymbiont of Stachyamoeba lipophora: EF513_04780
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Entry
EF513_04780 CDS
T05750
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ren
Rickettsiales endosymbiont of Stachyamoeba lipophora
Pathway
ren03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ren00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EF513_04780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ren03019
]
EF513_04780
03009 Ribosome biogenesis [BR:
ren03009
]
EF513_04780
Enzymes [BR:
ren01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
EF513_04780
Messenger RNA biogenesis [BR:
ren03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EF513_04780
Ribosome biogenesis [BR:
ren03009
]
Prokaryotic type
rRNA processing factors
EF513_04780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AZL15857
UniProt:
A0A3Q8T7K7
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All DBs
Position
1037646..1039766
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AA seq
706 aa
AA seq
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MTVRMLVDATYSEETRVATCSNNVVEDFDFETSTKKQLKGNIYLGRITRIEGSLQAAFIE
YGAGKHGFLSFSEIHPDYYYLEEEENGSFDPYAKLRSILESRELLLPSVAPEDEEIPISS
SDVEEPNLVVEQPAPEILELKEDSSFVADSISEELDAELHDKLQRRHKIQDVIKKDQIIL
IQVIKEERGNKGASFTSYISLAGRYCVLMPNSIRQGGISRRIANPDARRRIKEIIDNLSL
PEGAGVIIRTAGADRSKGEIKRDYEYLVKLWNEVRKKVSSTNAPEFIHAESDLIKRCLRD
NYDSSVDEIVIQGEKAYKTAKDFIKMMMPDQISKLKPYKSKVPIFTRYKIEEQLSSMFST
NVPLPAGGYLVINPTEALTSVDINSGRSTSESNVEETALKTNLEAAQEIARQLRLRDVAG
LVVVDFIDMIEPKNRAAVENCLRQALQKDRAKIQVSRISPLGLLEMSRQRLRSSFMESHT
HTCQHCQGRGRVRVIETMAVEILRAVEIELVYGDYESVNVHLGFEHAAYLFNFHKADITQ
LELKHKVRIYFLPSEHIIGEEYIIEKTKRSKPLKKEQIADEESEIEEEVVRSYAQRQPRK
DANEVMRDTQTESAFEEVSNVEVIEGVLKATKEGAYRKPARQRNNRRNRHNKYKKRSTME
RVSINDDHHERNEERELEYVGEAKHPTSRNTSETSLLKELWKRIID
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgacagtcaggatgttggtagatgcgacgtattcagaagaaacgcgtgtggcaacttgc
tcaaacaatgttgttgaagactttgattttgaaactagtacaaaaaaacagttaaaagga
aatatttatctagggcgtataacaagaatagaaggatccttacaggcagcctttatagaa
tatggcgcaggtaaacacggatttttatcattttcagaaattcatccggattactattat
ttagaggaagaagaaaacggaagttttgatccttatgcgaaacttagaagcattttagaa
tcacgtgaacttcttttgccaagtgtggctccggaagatgaggaaatccctatttctagt
tcagatgtggaagagccgaatctggttgttgaacagccagctccggaaattttagaattg
aaagaggatagttcttttgtggcggatagtataagtgaagagttagatgcagaactgcat
gacaaattgcaaaggcgccataaaattcaagatgtaattaaaaaagatcagataattctt
attcaggtgattaaagaggagaggggtaataaaggagcttcttttacttcttatatatct
ttggcaggtagatattgtgtattaatgcctaatagtataaggcaaggcggtatttccaga
agaatagctaaccctgatgctagaagaagaattaaagagataatcgataatcttagtttg
cctgaaggagctggggtaatcattagaaccgcaggagcagatagatccaaaggggaaatt
aagagagattatgaatatttagtaaagctttggaatgaagtaagaaaaaaagttagtagt
actaatgcgcctgagtttatacatgctgagagtgatctaataaaaagatgcttaagagat
aattacgatagctctgtagatgaaatcgtaattcaaggagaaaaggcttataagacagcg
aaagactttataaaaatgatgatgcctgatcaaatctctaaattaaagccttataaaagt
aaggtgccaatttttactagatataaaatagaagagcaattatcttcaatgtttagcact
aatgtaccactaccggctggtggttacttagtaattaatcctacggaagcattaacctcg
gttgatattaactccggtagatctacttcggagagtaatgtagaggaaacagctcttaag
actaatttagaggctgcgcaagaaattgcccgccaactacgattaagagacgtagctggc
ttagtggtggtagattttattgatatgatagagccaaaaaatcgtgcggctgtagaaaat
tgtttgcgccaagctttacaaaaagatcgtgcaaaaattcaagtgagcagaataagcccc
ttaggtttgctagaaatgtcccgtcaaagattaagatctagttttatggagtcgcatact
catacatgtcagcattgccaaggtagaggacgggtaagagtcattgaaaccatggcagtc
gaaattttaagagcggttgaaatagaattagtgtatggagattatgagagcgtaaatgtt
catttgggttttgaacatgcggcttacttatttaattttcataaagctgatataactcaa
ctcgaattgaaacataaagttaggatctatttcttgccttctgagcatattatcggcgaa
gaatatattattgagaaaactaaaagatctaagcctttgaaaaaagaacaaattgctgac
gaagaaagcgagatcgaagaagaagtggtacgcagttatgctcaacgccaacctcgcaag
gatgctaatgaagttatgcgtgatacacaaacagaatcggcgtttgaagaagtaagcaat
gttgaggttattgaaggggtgcttaaagctactaaagaaggggcttaccgtaaacctgct
cgccagcgtaataatcgtcgtaatcgtcataataagtataagaagcgcagtactatggaa
agagtttctattaatgatgatcatcatgagcgtaatgaagagagagagctggaatacgta
ggagaggctaagcatccaacatcacgcaatactagtgaaacctccttgttaaaagaatta
tggaaaagaattattgattaa
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