Candidatus Ruthia endofausta: HUE58_01760
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Entry
HUE58_01760 CDS
T06701
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
reo
Candidatus Ruthia endofausta
Pathway
reo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
reo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HUE58_01760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
reo03019
]
HUE58_01760
03009 Ribosome biogenesis [BR:
reo03009
]
HUE58_01760
Enzymes [BR:
reo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HUE58_01760
Messenger RNA biogenesis [BR:
reo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HUE58_01760
Ribosome biogenesis [BR:
reo03009
]
Prokaryotic type
rRNA processing factors
HUE58_01760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Thioredoxin_5
Motif
Other DBs
NCBI-ProteinID:
QKQ23923
UniProt:
A0A6N0HNN3
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All DBs
Position
complement(329200..330990)
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AA seq
596 aa
AA seq
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MNHILINATHSEEIRVGVVKNKKLIGLNIETSLNKKTKGNIYHGKISRVEQSLEAAFVDY
GKEKQGFLPFKEVAETLYNDAKAKGEKLTISDVLKEGEEIIVQIEKEERGNKGAALSTYI
NLAGAYMILMPNNPKSHGISRQIVASDRQSLKEIIGKIILPDHSGLIIRTAGAGKSFEEL
QWEVDYLSDLWKSINTAALARSAPFLIYQESDIIIRTLRDHLRSDTDSVIIDELEAFQNA
KEFVSFVLPHYLDRIKFFNVSEHSLFNHMGVETQVKSVFNRKVSLRTGATIVFDPTEALT
AIDVNSARATKGADIEETAYNTNLEASKEIALQLQLRDIGGLVVIDFIDMAAEEHRVSIE
KAMEKAINADRARIQIGTISQFGLLEMSRQRLMSSVSESVEKPCSACHGRGTTPTIPTLA
LTILRQLEDDCNAAKQTARLTIQSSVEVITYVLNEKRQEVTKLEDKYGIKITLLPNPYMQ
FPNFTINKQKKGDKKSQHKSYQGISKPQHVLAENGLSNQAEIPAINVNRPSTRVPEKKIS
LFEKIKNALFEKKKEQPNKRKINPNNRNRNRSCNKNRTQNNSTKQQKPKPQQKQNT
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atgaatcatattttaatcaatgcaactcattccgaagaaatcagagtgggtgttgtcaaa
aacaaaaaactaattggccttaatatagaaaccagccttaataaaaaaactaaaggcaat
atctaccatggcaaaatctctcgagtagaacaatcactagaggcagcatttgttgattac
ggcaaagaaaaacaaggttttttaccttttaaagaagttgcagaaacgttatataatgat
gccaaagctaagggcgaaaaactaaccatttctgatgttttaaaagaaggagaagaaatt
attgtccaaattgaaaaagaagagcgtggtaataaaggcgcagcactcagcacttatatc
aaccttgctggtgcttatatgattttaatgccaaacaatccgaaaagtcatggcatatca
aggcaaatagtcgcttcagaccgacaatctttaaaagaaattattggcaaaattattcta
cctgaccattcaggcttaatcattcgcactgcaggtgctggcaaaagctttgaagagttg
caatgggaagtagactatctttctgacttatggaaatcaattaatacagcagctctagca
cgcagtgcacctttcttaatttatcaagaaagtgatattattattcgcacattgcgcgac
catcttcgctctgatactgacagtgttattattgacgaattagaagcttttcaaaatgcc
aaagaatttgtcagttttgtgttgccacattacttagaccgcattaaattttttaatgtt
tctgagcattctttatttaaccatatgggcgttgaaactcaggttaaaagcgtatttaac
cgaaaagtatcactacgaacaggtgccaccattgtctttgacccaactgaagcacttact
gccattgatgtcaactctgctcgcgctactaaaggcgctgacattgaagaaaccgcctac
aacaccaacttggaagcaagtaaagaaattgccctacaactacaattaagagatattggt
ggattagtcgtgattgattttatcgatatggctgctgaagagcatagagtgtcaatcgaa
aaagccatggaaaaagccatcaatgcagatcgagcgcgcatccaaatcggcaccatttct
caatttggcttgctcgaaatgtcaagacagcgcttgatgagttcagtctctgaatcggtt
gaaaaaccttgttctgcttgtcatggtcgtggtactacgccaaccattccaacgttagca
ttaaccattttaagacaacttgaagacgattgtaatgcggctaaacaaacagcacgctta
accattcaatcaagtgtggaagtcattacttatgttttgaatgaaaaacgtcaagaagta
acaaaattagaagacaagtatggcattaaaattaccttactgcctaatccatatatgcag
tttcctaatttcaccattaataagcaaaaaaaaggggataaaaagtcacaacataaaagc
tatcaaggcatttcaaagccacaacatgtgctagctgaaaatggtctttcaaaccaagct
gaaattcctgctattaatgtgaatagacccagcacgcgcgttcctgaaaagaaaatttcc
ttgtttgagaaaataaaaaatgctttgtttgagaagaagaaagaacaacccaataaacgt
aaaataaatcctaataatagaaaccgcaacaggagttgtaataaaaacagaactcaaaac
aatagcactaaacaacaaaaaccaaagcctcaacaaaaacaaaatacataa
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