Candidatus Ruthia endofausta: HUE58_03170
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Entry
HUE58_03170 CDS
T06701
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
reo
Candidatus Ruthia endofausta
Pathway
reo03410
Base excision repair
reo03430
Mismatch repair
reo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
reo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HUE58_03170 (recJ)
03430 Mismatch repair
HUE58_03170 (recJ)
03440 Homologous recombination
HUE58_03170 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
reo03400
]
HUE58_03170 (recJ)
DNA repair and recombination proteins [BR:
reo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
HUE58_03170 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
HUE58_03170 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HUE58_03170 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
QKQ24158
UniProt:
A0A6N0HP62
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All DBs
Position
complement(584212..585906)
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AA seq
564 aa
AA seq
DB search
MLTRIIDQNLFDSYSDDIHTFLKKIYAARGINESHLSLNLVHLLKPNFLQLDVALILLEQ
ALLNQKRILIVGDFDCDGATASVVAVKSLRMMGVKFVDFLVPNRFEHGYGLSEEIVKLAI
QEKQPDLIITVDNGISSFDGVKLAKSSSIQVIITDHHLPSKTLPQADAIINPNLKGCEFL
SKNLAGVGVCFYLFSAFKTHLIKCDYFINHKITPPDLRNVLDLVALGTVADVVKLDQNNR
ILIDQGIKRIQQKKCVPGILALLEISNRPSATLCASDLGFSVAPRLNAAGRLSDISRGIK
CLLTENMNDARRYAQELEVFNQKRKQKQTRMQDEAQAIVDAQEVTEDKFAISLFDASWHE
GIVGIVAGKLKEDYHCPVAVFSQSGNDLKGSIRSIPSVHIKDLLDLLDRQNPDLILKFGG
HAMAAGLSIKPENFTGFKQAFANAIQTHLGNQIPKVELLTDGELEAFELSLDNAQLLIDA
GPWGQGFDEPIFYGEFELVEQKVVGEKHLKCRLKFTNNNTVYDGIAFFQAPIKNTKAQIT
YKLSINEWRGSTSLQLMIEQIHNI
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgcttactagaataatagaccaaaatttatttgattcatattcagatgacattcatact
tttttaaagaaaatttacgccgctcgtggtattaatgagtcgcatttatctttgaatctt
gtccatcttttaaaacctaatttcctccaactagatgtcgcacttattttacttgagcag
gccctacttaatcaaaaacgtattttgattgttggcgattttgattgtgatggggcaact
gcatctgttgtagcagttaagtcattacgcatgatgggggtaaaatttgttgatttctta
gtgcctaatcgttttgagcatggttatggtttgagcgaggaaattgtaaaattagctatt
caagaaaaacaacccgatttgatcatcacagttgacaatggcatttcaagttttgacggg
gtaaaactggcaaaatcatcaagtattcaggtgattatcactgatcatcacttacccagt
aaaaccctgccacaagcagatgccattatcaaccccaatcttaagggttgtgaattttta
agcaaaaatttagcaggtgttggcgtgtgtttttacttgttttcagcttttaaaactcat
ttgattaagtgtgattattttatcaatcataaaatcactccgccagatttgcgaaatgta
ttggatttagttgcacttggcacagttgctgatgtggtaaaacttgaccaaaataataga
attttgattgaccaaggcattaagcgtatccagcaaaaaaaatgcgtccctggtattttg
gcattactggaaatctcaaatcgacccagtgcaaccctgtgtgccagtgatttaggtttt
tcagtcgcaccacgcctaaatgcagcagggcgtttgagtgatatttctcgtggcattaaa
tgcttgctaactgaaaatatgaatgatgctagacgttacgcccaagagttagaagtcttt
aatcaaaagcgcaaacaaaagcaaacccgtatgcaagatgaggcgcaagccattgtggat
gcgcaagaagtaacagaggataaatttgccatcagcttgtttgatgcatcttggcatgaa
ggcattgtcggtattgttgctggtaaacttaaagaggattaccattgtccagttgcggta
ttttctcagtcgggtaatgatttaaaaggctctattcgctctattcccagtgtacatatc
aaagatttattagatttattagataggcaaaatcctgatttaattttaaaatttggtggt
catgctatggcagcaggattaagcatcaagcctgaaaatttcactggttttaagcaagct
tttgcaaatgctattcaaactcatttaggcaatcaaatacccaaagttgaactgttaacc
gatggtgaattagaggcatttgaattgtctttagataatgcacaattattaattgatgct
ggaccttggggtcaagggtttgatgaaccaattttttatggtgagtttgagttggttgag
caaaaagtggttggcgaaaaacacttaaaatgccgtttaaaatttacaaacaataacact
gtatatgatggcattgcattttttcaagcacctattaaaaacacaaaagctcaaattacc
tacaaactatccattaatgaatggcgaggtagcacttcattacaacttatgattgaacaa
attcacaatatataa
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