Candidatus Ruthia endofausta: HUE58_04610
Help
Entry
HUE58_04610 CDS
T06701
Name
(GenBank) RNB domain-containing ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
reo
Candidatus Ruthia endofausta
Brite
KEGG Orthology (KO) [BR:
reo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
reo03016
]
HUE58_04610
Enzymes [BR:
reo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HUE58_04610
Transfer RNA biogenesis [BR:
reo03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
HUE58_04610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
HTH_RNase_II
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
QKQ24409
UniProt:
A0A6N0HPU2
LinkDB
All DBs
Position
complement(813139..814944)
Genome browser
AA seq
601 aa
AA seq
DB search
MINALVAYKGKPARIVKQTMHKFALEFADGSSRSVREKDFRFIHPEFVQVDDACAHADIA
VLEDFQEETLTLEEITQWLFDEYSAKNAWCSRILIEDGLYLFWQKDKVFIRPTAQVESIQ
TKRDAQILEAENLKHCVDNLSNNTFDKQDLSYIEEIEKVALNQSKHAKILANIGIENTPE
SAHKLLLRLDYFKPSFNPYPARHDISKDEQIDVSMVQVERVDLTHLSSYAIDNADSNDAD
DAISIDGDKIWIHVADVSLIATAGSELDTYAQERVSNLYLPEQIIHMLPVSATKMCALGL
AETSSALSIGFTLESGEIDNIEVVHSLIKVTNISYDDADGMLVSNEHLSKLQGITKTHKQ
YRDNCGAISLNLPNVDVRFKQGQVSITPQSSSQSRELVAEMMVMAGRVVAQFSVDNDIVM
PYAIQDEGKFPQGALDNKDALSLSESFKATKFFKRSTTSTKNLPHFGLGLKAYLRITSPL
RRYLDLLAHQQLSHFIKGEDTLNKEDVKNIIGIHNVNMSSVGRTVRFSNDHYKCVYLLDN
PSWQGEGVVVDTRGDKVLFMIPELGMMTQIKFKILPKLDEKIALKVTTVDLVDCRANFKT
I
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
ttgattaacgctttagttgcctacaaaggcaaacctgcgcgtattgttaagcaaacgatg
cataaatttgcattagagtttgctgatggttcttcgcgttcggtacgggaaaaagatttc
cgttttattcaccctgaatttgttcaagtagatgatgcttgtgcacatgcagatattgct
gttcttgaagattttcaagaagagacactaacattagaagaaataacgcaatggttgttt
gacgaatacagtgccaaaaacgcttggtgtagtcgtattttaattgaagatggtttgtat
cttttttggcaaaaagacaaagtttttatacgtccaactgctcaagttgaaagcatccaa
actaagcgtgacgcccaaattcttgaggctgaaaatcttaaacactgtgtggataatctt
tccaataatacctttgataagcaagatttgtcttatattgaagagattgaaaaagttgca
ctaaatcaatctaagcacgctaagattttggccaatattggtatagaaaatacacccgag
tctgctcataaattgttattaagacttgactatttcaagccaagctttaatccctatcca
gcgcgtcatgacatttctaaggatgagcaaattgatgttagtatggttcaagttgagcgc
gttgatttaacgcatttatccagttatgcaatagacaatgctgattcaaacgatgctgat
gatgcaattagtattgatggtgataagatttggatccatgttgctgatgtatctttgatt
gctactgctggctctgagttggatacttacgcacaagaacgtgtttctaatttatatttg
cctgaacagattattcacatgttgcctgtttctgcaacaaaaatgtgcgcattggggttg
gctgaaacatcaagtgctttatcgatagggtttactttagaatcaggtgagattgataat
attgaagtagttcatagtttgatcaaagtgactaatatcagctatgatgatgcagatgga
atgttagtgtctaatgaacatttatccaaattacaaggcattacaaagacgcacaaacaa
tatagagataattgtggtgcaatcagtttaaatttgcccaatgttgatgttagatttaag
caaggtcaagtgtcaattacgccacaaagctcaagtcaaagtcgtgaattggtggctgaa
atgatggtaatggcgggtcgtgttgttgcacaattttctgttgataatgacattgttatg
ccttatgcaattcaagatgaagggaagtttccacaaggagcactggataataaagatgca
ttgtctttatctgagtcattcaaagccacaaagttttttaaacgttcaaccacatccacc
aagaatttaccacattttggactaggacttaaagcgtatttacgtattaccagtccactt
agaaggtatcttgatctgcttgcacatcagcaactcagccattttattaaaggtgaagat
acactaaacaaggaagatgttaaaaatattatcggcattcataatgtcaacatgtccagt
gttggtagaacggtgcgttttagtaatgaccattataaatgcgtttatctgcttgataat
ccatcatggcaaggtgaaggtgttgtggtggatacacgtggtgacaaagtgttgtttatg
attcctgaattgggtatgatgacgcagattaagtttaaaattttgcctaagctagatgaa
aagatagcgctaaaggtaacaaccgttgatttagttgactgccgtgctaatttcaagacg
atttag
DBGET
integrated database retrieval system
