Candidatus Ruthia endofausta: HUE58_05375
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Entry
HUE58_05375 CDS
T06701
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
reo
Candidatus Ruthia endofausta
Brite
KEGG Orthology (KO) [BR:
reo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
reo03032
]
HUE58_05375 (topA)
03400 DNA repair and recombination proteins [BR:
reo03400
]
HUE58_05375 (topA)
Enzymes [BR:
reo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HUE58_05375 (topA)
DNA replication proteins [BR:
reo03032
]
Prokaryotic type
DNA Topoisomerases
HUE58_05375 (topA)
DNA repair and recombination proteins [BR:
reo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HUE58_05375 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
QKQ24538
UniProt:
A0A6N0HQJ5
LinkDB
All DBs
Position
complement(950982..953315)
Genome browser
AA seq
777 aa
AA seq
DB search
MAKNLVIVESPAKAKTIEKFLGKDFSVKSSIGHIRDMPKKNMGIDIENNFTLTYEITTDK
KKVVADLRKAVKIAEKVYLATDEDREGEAIAWHLLEALNLPKDTPRIVFHEITKSAITHA
IVKPRTVDYQLVDAQQARRVIDRLVGFEISPVLWRKISGARSAGRVQSPVMRLVVERERE
ISQYIANSTYKVKAELVSESGEIFEIKLSKEFESKEQALAFANALLSANLTVASIEKKPS
KRSPKPPFITSTLQQEASQKLGFSVKQTMTLAQNLYREGSITYMRTDSFTLSETVIEAAG
QVIVKRFDSEYHHIRRYKTKDAGAQEAHEAIRPTDLTKPSIFGIEDQAAKLYSLIYKRTL
ACQMSDAQLQKTQIKINISGLDEKFLANGKILTFPGFLRVYDYLSSEDKLLPDLHKGDTL
SLTSFKARENFSRVKPRYTEASLVKKIEKMGIGRPSTFATMISTVQDRNYVTKETREGAE
RAYELIEIKDSQVIQSQASEITGAEKNKLFPTNVAYLLTDFLVKYFDNIIDYKFTAKLES
DFDTIATQNVPWQGVVKNFYTPFHQKIEDAADISREETHGMRELGTDPKSGKRVSVRFGR
CGAFAQIGHKDDEDKPTFASLRGSLDIEGITLDEALELFNMPRTVGETNDFGIIEANYGR
FGPYIQYGKKYVSLKEDIPEEVSLEKALELIAVKEKFDAERTIKTFDDSDIQVLNGCFGP
YIWNGKKKGKGQKNITIKKVFGDKDPAGLTLEECKKAVSGKFKPKAKPRKKKKITKK
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaaatcttgttattgttgagtcccctgccaaagctaaaaccattgaaaagttt
ttaggtaaagattttagtgttaaatctagtattggccacatccgcgacatgcctaagaaa
aacatgggcattgacattgaaaataattttaccctcacgtatgaaattaccacagataag
aaaaaagtagtcgctgacttgcgtaaggctgtaaaaatagcagaaaaagtctacctcgca
acggacgaggatcgtgaaggtgaagccattgcttggcatttgctagaagcgctcaattta
cctaaagataccccaagaattgtttttcatgagattaccaagagtgcaattactcacgct
attgttaagcctagaacagttgattatcagttggtagatgctcaacaagcgcgccgcgtt
attgacagattagtaggttttgaaatatcacctgttttatggcgcaaaatttcaggcgca
cgttccgctggcagggtacaatccccggtgatgcgcctcgtggtcgaaagagagcgagaa
attagccaatatattgccaattctacttacaaagtcaaagcagaattagtgagtgaaagt
ggcgagatatttgagattaaactgagtaaggagtttgaatctaaagagcaagcattggcc
tttgctaatgcacttttatcggctaatttaaccgttgcatcaattgaaaaaaaaccctct
aaacgctcaccaaaaccaccctttatcacctcaaccttacaacaagaagcctctcaaaaa
ttaggattttcagttaagcaaaccatgactttggcacaaaatttgtaccgtgaagggtct
attacttatatgcgaactgactcattcacgctatcagaaacagtaattgaggcagccggc
caagtcattgtaaaaagatttgacagtgaatatcaccacataagacgatataaaaccaaa
gatgcaggtgcgcaagaagcgcacgaggcaattcgcccaaccgatttaaccaagcccagt
atttttggtattgaagatcaggctgctaaactatatagccttatttacaaacgcacattg
gcttgccaaatgagcgacgctcaattacaaaagacccaaataaaaatcaacatttcagga
cttgatgaaaaattcctagccaatggcaaaatattgacatttccaggatttctaagagtt
tatgattatctatcgtcagaggataaactattacccgatttacacaaaggcgacacattg
agtttgaccagctttaaagctagagagaatttttcaagagtcaaacctcgctacactgaa
gcatcgctggtgaaaaagattgaaaaaatgggcatcggcaggccttcaacattcgccact
atgatatcaacagtacaagacagaaattatgtcacaaaagagaccagagaaggtgctgaa
cgagcgtatgaattgattgaaatcaaagacagccaagttattcaatcccaagcaagcgaa
ataacaggtgctgaaaaaaacaaactgttcccgaccaatgttgcctatttgctcactgat
tttctagtcaaatattttgacaacattattgattataaatttaccgctaaacttgaaagc
gattttgacaccatcgccacacaaaatgttccgtggcaaggtgtggttaaaaacttttac
accccttttcatcaaaaaatcgaagatgctgctgacatttccagagaagaaacccacggt
atgcgcgaactcggtactgacccaaaaagtggcaaacgcgttagcgtgcgctttggcaga
tgcggtgccttcgcccaaatcggccataaagacgacgaagacaagccaacctttgcctca
ctcagaggctcattagatattgaaggcatcacccttgatgaggccttagaattatttaat
atgccccgcactgttggcgagactaatgattttggcatcatcgaagccaactatggtcgt
tttggtccctacattcaatatggtaaaaaatacgtctcactcaaagaagatatcccagaa
gaagttagcctagaaaaagcactagagctgattgctgttaaagaaaaattcgacgccgaa
cgtaccatcaaaactttcgatgattccgatatccaagtcctcaacggttgttttggcccc
tacatctggaatggtaaaaagaaaggtaaaggtcaaaaaaatattactatcaaaaaagtt
ttcggcgataaagacccagcaggcttaacccttgaagaatgcaaaaaagcggtttctgga
aaatttaaacctaaagccaagcctagaaaaaagaaaaaaattactaaaaaatga
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