Rhizobium etli bv. phaseoli IE4803: IE4803_CH02107
Help
Entry
IE4803_CH02107 CDS
T03667
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rep
Rhizobium etli bv. phaseoli IE4803
Pathway
rep03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IE4803_CH02107 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rep03400
]
IE4803_CH02107 (mfd)
Enzymes [BR:
rep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IE4803_CH02107 (mfd)
DNA repair and recombination proteins [BR:
rep03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
IE4803_CH02107 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
SecA_DEAD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AJC79306
LinkDB
All DBs
Position
2097761..2101264
Genome browser
AA seq
1167 aa
AA seq
DB search
MIPGFDAKKLAAIAEPLTIGNVPAGLEPLLLAELARTGEPVAYVMSDGHRMADLEQMLGF
VAPDIPVLTLPAWDCLPYDRVSPSADTSARRLAALGGLIAHRKKPHAAIVLVTANAMLQK
VAPHDVIESLSFSARPGNQLRMDDLAGRLERNGFDRVATVREVGEYAVRGGILDVFVPGS
EEPVRLDFFGDTLESIRSFDPASQRTTGQVRSLDLNPMSEVTLTPDTISRFRKNYLSAFG
ATTRDDALYLAVSEGRRYPGMEHWLPFFYEKLDTVFDYLSGFRVVTDHTVREAAEERSKL
VLDYFDARLNSGQPAKGQVAQGTPYKPVAPGQLYLDSKLFAKTLDALGAIRVSPFNEIEG
EARRVVNIEARQGQRWARSNAEGGGDAERVNIFDVVVKHIADRRAGGAKVLVTAWTEGSL
ERLLQVLNEHGLEKVKPVEALKDLAALGKGEAAAAVLNLESGFEAGDLVVIGEQDILGDR
MVRRSKRRKRAADFIAEVAGLDEGSIVVHAEHGIGRFIGLKTIEAAGAPHACLELQYADE
AKLFLPVENIDLLSRYGGEGTDAQLDKLGGGAWQMRKAKLKKRLLDMADALIRIAAERLT
RHAPVLTTPDGLYDEFAARFPYDETEDQDNAIDAVRSDLGAGRPMDRLVCGDVGFGKTEV
ALRAAFVAAMNGVQVAIVVPTTLLARQHFKTFSERFRGLPVRIQQASRLVGAKELALTKK
EVAQGKTDIVVGTHALLGAGIKFANLGLLVIDEEQHFGVKHKERLKELKSDVHVLTLSAT
PIPRTLQLAMTGVRELSLITTPPVDRMAVRTFISPFDSLVIRETLMREHYRGGQSFYVCP
RLADLADVHAFLQSDVPELKVAVAHGQMPAGELEDIMNAFYEGRYDVLLSTTIVESGLDV
PTANTLIVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKVLTATADRRLKVLQSLD
TLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKGVDEIHDTGW
SPQISVGTTVMIPEDYVPDLHLRMALYRRLGELTELKEIDGFGAEMIDRFGPMPIEVQHL
LKIVYIKSLCRTANVEKLDAGPKGVVVQFRNKEFPNPANLVGYIGKQGTMAKIRPDHSLF
LTRDLPTPEKRLQGAAVIMTQLAEMAR
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgatccctggtttcgatgcgaagaagcttgcggccattgccgagccgctgacgatcggc
aatgtgcctgccggcctcgaaccgctgctgctcgccgaactcgcccgcacgggagagccg
gtcgcctatgtcatgtcagacggccaccgcatggccgatctcgagcagatgctgggcttc
gtcgcccccgacattccggttctcaccctgccggcctgggactgtctgccctatgaccgc
gtctcgccgagcgccgatacctcggcccgccggcttgcggcactcggcggcctcatcgcc
caccggaaaaagccgcatgcggccatcgtgctcgtcaccgccaatgccatgctgcagaag
gtggcgccgcatgacgtcattgaaagcctgagtttttcggcccggcccgggaaccagctg
cgcatggacgatctcgccggacgtctggagcgcaacggtttcgaccgcgtcgcgaccgtt
cgcgaagtcggcgaatatgccgtgcgcggtggcattctcgacgtcttcgtgccgggatcg
gaagagccggttcgcctcgatttcttcggcgatacgctggaatcgatccgcagcttcgat
ccggcaagccagcgcacgaccggccaggtgcgctccctcgatctcaacccgatgagtgag
gtgacgctgacgccggatacgatcagccgcttccgtaagaattacctctcggctttcggc
gcgacgacacgtgatgacgcgctttatctcgccgtctccgaaggccgccgttaccccggc
atggagcattggctgccgttcttctacgagaagctcgataccgttttcgattatctcagc
ggcttccgagtcgtcaccgaccatacggtgcgtgaggcggccgaggagcgctccaagctc
gtcctcgattatttcgacgcgcggctgaattccggccagcccgccaagggccaggtagcg
cagggcacgccctacaagccggtggcgccggggcagctctacctggacagcaagcttttc
gccaagacgctcgacgcgctcggcgcgatccgtgtcagccctttcaatgaaatcgagggc
gaggcgaggcgggtcgtcaatatcgaagcccgccagggccagcgctgggctcgctcgaat
gccgaaggcggcggcgatgccgagcgcgtcaatatcttcgacgtcgtcgtcaagcacatc
gccgaccgccgcgccggcggggcgaaagtgctggtcaccgcctggaccgagggctcgctg
gagcggctgctgcaggtgctgaacgagcacggcttggaaaaggtgaagccggtcgaggcg
ctgaaggatctcgcggcgctgggcaaaggcgaggccgccgccgccgtgctcaatctcgaa
tccggcttcgaggccggcgatctcgtcgtcatcggcgagcaggatattctcggcgaccgc
atggtgcgccgctccaagcgccgcaagcgcgccgccgatttcatcgccgaggtcgccggt
ctcgacgagggctcgatcgtcgtccatgccgaacacggcatcggccgcttcatcggcctc
aagaccatcgaggcggcgggcgccccgcatgcctgcctcgaactgcaatatgccgacgag
gccaaactcttcctgccggtcgaaaacatcgatcttctctcgcgctacggcggcgagggc
accgacgcccagctcgacaagctcggcggcggcgcctggcagatgcgcaaggccaagctc
aagaagcgcctgctcgacatggccgatgcgctgatccgtatcgccgccgagcgcctgacg
cgccatgcgcccgttctgacgacgccggacggcctttacgacgaatttgccgcccgcttc
ccctatgatgagaccgaggaccaggataacgccatcgacgcggtgcgctccgatctgggc
gccggccggccgatggatcgtctcgtctgcggtgacgtcggtttcggcaagaccgaagtg
gcactgcgcgccgccttcgtcgccgcgatgaatggcgtccaggttgccatcgtcgtgccg
acgacactgctcgcgcgccagcatttcaaaaccttttccgagcgcttccgcggcctgccg
gtgcgcatccagcaggcctcacgcctggttggcgccaaggagctggcgctgactaagaag
gaagtggcgcaagggaagaccgatattgtagtcggcacccatgcgctgctcggcgccggc
atcaaatttgccaatctcggcctgctcgtcatcgacgaggagcagcatttcggcgttaag
cacaaggagcggttgaaggagctcaagagcgacgtgcacgtgctgacgctgtcggcgacg
ccaatcccgcgtacgcttcagcttgccatgaccggggtgcgcgaactgtcactgatcacc
acgccgccggtcgaccgcatggcggtgcgcacattcatctcgcccttcgacagcctggtc
atccgcgagacgctgatgcgcgaacactatcgcggcggccagagtttctatgtctgcccg
agacttgccgatctcgccgatgtgcacgccttcctgcagtccgacgtgccggagctgaag
gttgccgtcgctcatggccagatgccagccggcgaactcgaagacatcatgaacgccttt
tatgaagggcgctacgacgtgctgttgtccacaaccatcgtcgaatccggtctcgatgtg
ccgacagccaacacgctgatcgtccaccgcgccgatatgttcggccttgcccagctctat
cagttgcgcggccgcgtcggccgatcgaaggtgcgcgccttcgcgctcttcacccttcct
gtgaacaaggtgctgactgcgacggcagaccgccgcctcaaggtgctgcagtcgctggat
acgctcggcgccggcttccagctggcaagccacgatctcgatatccgcggcgccggcaac
ctgctcggcgaagagcaatccggccatatcaaggaggtcggcttcgagctctatcagcag
atgctggaagaagcggtcgccgaggtgaagggcgtcgatgagatccatgacaccggctgg
tcgccgcagatttcggtcggcacgacggtgatgatcccggaagactatgttcccgatctg
catctgcggatggcgctttaccgccgtctcggcgaactcaccgagctcaaggagatcgac
ggcttcggcgccgagatgatcgaccgcttcggcccgatgccgatcgaagtccagcatctt
ttgaagatcgtctacatcaagtcgctctgccgcaccgccaatgtcgaaaaactcgatgcc
ggcccgaagggcgtcgtcgtgcagttccgcaacaaggaattcccgaatccggcaaatctc
gtcggttatatcggcaagcagggcacgatggcgaagatccgcccggatcacagcctgttc
ctgacccgcgacctgccgaccccggaaaagcgcctgcagggcgccgctgttatcatgacg
caactggccgagatggcgagataa
DBGET
integrated database retrieval system
