Rhizobium etli bv. phaseoli IE4803: IE4803_CH03041
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Entry
IE4803_CH03041 CDS
T03667
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rep
Rhizobium etli bv. phaseoli IE4803
Pathway
rep03420
Nucleotide excision repair
rep03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IE4803_CH03041 (uvrD)
03430 Mismatch repair
IE4803_CH03041 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rep03400
]
IE4803_CH03041 (uvrD)
Enzymes [BR:
rep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IE4803_CH03041 (uvrD)
DNA repair and recombination proteins [BR:
rep03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IE4803_CH03041 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
IE4803_CH03041 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
PcrA_UvrD_tudor
AAA_11
DUF4420
Motif
Other DBs
NCBI-ProteinID:
AJC80222
LinkDB
All DBs
Position
3054259..3056739
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AA seq
826 aa
AA seq
DB search
MSNSFDDIPFFDEEPGEMARKPQPPAAPAGRAPAAGGGIAARAMAARDGGKRPDYLAGLN
PEQTEAVETLEGPVLVLAGAGTGKTRVLTTRIAHILNTGRAFPSQILAVTFTNKAAREMK
ERIALLVGGAVEGMPWLGTFHSIGVKLLRRHAELVGLSSDFTILDTDDVVRLIKQLIQAE
GLDDKRWPAKQFAGMIDTWKNKGLGPADIPEGDARAFANGRGRDLYFAYQARLSTLNACD
FGDLLMHPIAIFRKNPDLLKEYHGRFRYILVDEYQDTNTAQYMWLRLLAQRSKGEPQNVC
CVGDDDQSIYGWRGAEVDNILRFEKDFPGAKVIKLERNYRSTEHILGAAAHLIAHNEGRL
GKTLFTDRADPDDVKVQVHASWDSEEEARAIGEEIEQLQRGKHLLNDMAILVRASFQMRE
FEDRFVTLGLNYRVIGGPRFYERLEIRDAMAYFRLVAQPADDLAFERIINTPKRGLGDTT
VRALHDYARARDIPMLAAAADIIETDELKPKARKALFDVIQSFRRWQELLENTPHTELAE
QILEESGYTDMWKNDKSAEAPGRLENLKELIRSMESFESMRGFLEHVSLVMDAETNENLD
AVSIMTLHSAKGLEFDTVFLPGWEEGLFPHQRSLDESGRAGLEEERRLAYVGITRAKRRC
HIWFVSNRRIHGLWQSTLPSRFLDELPETHVEVAEMEQSYGGYGRGGYGQSRFDNAEPFA
NSYSTPGWKRAQANKTDATRDNWGTRSGHAVERIGYGESGPKGRTIDGELVAKSTSSEPS
RFTLGDRVFHMKFGNGNITGIEGNKLTIDFDRAGQKRVLDGFVEGV
NT seq
2481 nt
NT seq
+upstream
nt +downstream
nt
atgagcaatagtttcgacgacatccccttcttcgacgaagagccgggcgaaatggcgcgc
aagccgcagccgcctgccgcacccgccggaagggcgcccgctgccggcggcggtatcgcc
gcccgcgccatggcggcgcgagacggcggcaagcgaccggattacctcgcgggcctcaat
cccgaacagacggaagccgtggaaaccttggaaggtccggttctcgtcctcgctggcgcc
ggcaccggcaagacacgagtactgaccacgcgcatcgcccacatcctcaataccggccgc
gccttcccatcgcagattctcgccgtcaccttcaccaacaaggccgcccgcgagatgaag
gagcgcatcgcgctcctcgtcggcggcgccgtcgagggcatgccctggctcggcaccttc
cattcgatcggcgtcaagcttctacgccgtcacgccgagctcgtcggcctcagctccgat
ttcaccattctcgacaccgacgacgtcgtccgcctgatcaagcagctgatccaggccgaa
ggtcttgacgacaagcgctggccggccaagcagttcgccggcatgatcgacacctggaag
aacaagggtctcggcccggccgatattcccgaaggcgacgcgcgtgccttcgccaatggc
cgcggccgtgatctctatttcgcctatcaggcgcgcctgtcgacgctcaacgcctgcgat
ttcggcgatctgctgatgcatccgatcgcgatcttccgcaagaacccggatctcctcaag
gaatatcacggccgcttccgttatatcctcgtcgacgagtatcaggacaccaataccgca
caatatatgtggctgaggctacttgcccagcgcagcaagggcgagccgcagaatgtctgc
tgcgtcggcgacgatgaccagtccatctacggctggcgcggcgccgaggtcgacaatatc
ctgcgcttcgagaaggatttccccggcgccaaggtgatcaagctcgagcgcaattatcgc
tcgaccgaacatatcctcggagccgccgcccatctgatcgcccataatgaaggccgcctg
ggcaagacgctgttcaccgaccgcgccgatcccgacgacgtcaaggtgcaggtccacgcc
tcctgggattcggaggaggaagcccgcgccatcggcgaagagatcgagcagctccagcgg
ggcaagcatctgctgaacgacatggcgatcctcgtgcgcgcctccttccagatgcgcgag
ttcgaagaccgcttcgtcaccctcggcctcaattaccgggtcatcggcggcccgcgcttc
tacgagcgcttggaaatccgcgatgccatggcctatttccgcctggtcgcccaaccggcc
gacgacttggctttcgagcgcatcatcaacacgccgaagcgcggcctcggcgacacgacg
gtgcgggccctgcacgactatgcgcgtgcccgcgacatcccgatgctggcggcggcggcc
gacatcatcgagaccgacgagttgaagccgaaggcgcgcaaagccctcttcgacgtgatt
caatctttccgccgatggcaggaactgcttgaaaacacaccgcataccgaacttgccgag
cagatcctcgaagagtccggctataccgatatgtggaagaacgacaagagcgccgaagcg
ccgggccgccttgaaaacctgaaagaactgatccgctcgatggagagcttcgagtcgatg
cgcggtttcctcgagcacgtctccctcgtcatggatgcagagaccaacgagaacctcgac
gccgtttcgatcatgacgctgcattcggccaagggcctggaattcgataccgtcttcctg
cccggctgggaggaaggcctgttcccgcaccagcgctcgctggatgaaagcggccgcgcc
ggcctggaggaagaacgacggctggcctatgtcggcatcacccgcgccaaacgccgctgc
cacatctggttcgtctccaaccgccgcatccacggcctctggcaatcgacgctgccctct
cgtttccttgacgagctgccggaaacccatgtcgaggtcgccgagatggagcagagctac
ggcggttacggccgcggcggctacggccagtcccgcttcgacaatgccgaacctttcgcc
aactcctattccacgcccggctggaaacgtgcccaggccaacaagaccgatgccacgcgc
gacaactggggcacccgctccggccacgccgtcgaacgcatcggctatggcgaaagcggc
ccgaagggacgcacgatcgatggcgagctggtggcgaagtcgacctcgtcggagccgtcg
cgcttcaccctcggcgatcgcgtattccacatgaaattcggcaatggcaacattaccggc
atcgaaggcaacaagctgacgatcgacttcgaccgtgcggggcagaagcgggtgctggac
ggtttcgtcgaaggcgtctga
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