Rhizobium etli bv. phaseoli IE4803: IE4803_CH03381
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Entry
IE4803_CH03381 CDS
T03667
Name
(GenBank) ATP-dependent RNA helicase protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rep
Rhizobium etli bv. phaseoli IE4803
Pathway
rep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IE4803_CH03381
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rep03019
]
IE4803_CH03381
Enzymes [BR:
rep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IE4803_CH03381
Messenger RNA biogenesis [BR:
rep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IE4803_CH03381
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
NAT10_TcmA_helicase
AAA_22
Flavi_DEAD
Snf7
Motif
Other DBs
NCBI-ProteinID:
AJC80550
LinkDB
All DBs
Position
3401200..3402888
Genome browser
AA seq
562 aa
AA seq
DB search
MKPDRMVRSGESHCGAPKGYTLTNFESLGVSKPIVATLFQLGIETPTPIQEQAIPLLLQG
RDLIGLAQTGTGKTAAFGLPLIEKLLADERRPDNRTTRTLILAPTRELVNQIADNLKKFI
RKSPLRINVVVGGVSINKQQLQLEKGTDVLVATPGRLLDLVNRRAITLTTVRYLVLDEAD
QMLDLGFVHDLRKIAKLVPKKRQTMLFSATMPKAIADLAGEYLVDPVKVEVTPPGKAADK
VEQYVHFVAGKNDKTELLRKSLTENPDGRAIVFLRTKHGAEKLMKHLDNIGYSVASIHGN
KSQGQRERALKAFRDGSIKTLIATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTAR
AGRDGIAIAFCAPDEAKLLRDIERLMGIDIAVASGEPPANISNSGPRRGNGNGNNRNRGG
GQGRGEGRGEGRGDANRSEHRGSRQERRPRPERTGRNEDFRGQRRGEAAPDLGPDNDLVS
TSDFRPSAKPQRPAHQGAHANGEPSGHHRGNNRHAHGRPARKHGEDRGQHQAQGGEPRRE
GNGGNRRGGSGSRNGGQRRERA
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccggatcgcatggtgcgttccggcgaaagtcattgtggcgccccgaaaggttat
accttgactaattttgaatcgcttggtgtctccaagccgatcgtcgccaccttgttccag
ctcggcatcgaaacgccgaccccgatccaggaacaggccatccccctcctcctccagggc
cgggacctgatcggccttgcccagaccggcaccggcaaaaccgccgccttcggcctgccg
cttattgaaaagctgctcgccgacgagcgtcgccccgacaaccgcacgacgcggacgctg
atcctggcgccgacccgcgagctggtgaaccagatcgccgacaacctgaagaagttcatc
cgcaaatcgccgctgcgcatcaatgtcgtcgtcggcggcgtctccatcaacaagcagcag
cttcagctggaaaaaggcaccgatgttctggtcgccacgcccggccgcctgcttgacctg
gtcaatcgccgcgccatcaccctgaccacagtgcgctatctcgtgctcgatgaggccgac
cagatgctcgacctcggcttcgtgcacgatctgcgcaagatcgccaagctggtgccgaag
aagcgccagaccatgctgttttcggccaccatgccgaaggcgatcgccgatctcgccggc
gaatatctcgtcgatcccgtcaaggtcgaagtcacgcctccgggcaaggctgccgacaag
gtcgagcagtatgtccatttcgtcgcgggcaagaacgacaagaccgagctgctgcgcaag
tcgctgaccgaaaaccccgatggccgcgccattgtcttcctgcgcaccaagcacggcgcc
gagaagctgatgaagcatctcgacaatatcggctattccgtcgcctcgatccacggcaac
aagagccagggccagcgcgagcgggcgctgaaggccttccgcgacggcagcatcaagaca
ctgatcgccaccgacgttgccgcccgcggcatcgacatcccggccgtcagccacgtctac
aactacgacctgcccgaagtgcccgacgcctatgttcaccgcatcggccgcacggcgcgc
gccggccgcgacggcatcgccattgccttctgcgcccccgacgaagccaagctgctgcgt
gatatcgagcgcctgatgggcatcgacatcgcagtcgcaagcggcgaaccgccggccaac
atcagcaacagcggcccccgccgcggcaacggcaatggcaacaaccgcaatcgcggtggc
ggccagggtcgtggtgagggtcgcggcgaaggccgtggcgacgccaaccgctcggaacat
cgcggcagccgccaggaacgccgcccgcgtcccgagcggaccggccgcaacgaggatttc
cgcggccagcgccgcggcgaagcggccccggacctcggccccgacaacgacctggtctcg
acctccgacttccgcccctcggcaaagccgcagcgtcccgcacatcaaggcgcccacgcc
aatggcgagccgagtggtcatcaccgcggcaataaccgccacgcccacggccgcccggcc
cgcaagcacggtgaagatcgcggtcagcaccaggcccagggcggcgaaccgcgccgtgag
ggcaatggcggcaaccgccgcggcggctctggctcccgcaatggcggccagcgccgcgaa
cgcgcctga
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