Prescottella equi: REQ_20540
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Entry
REQ_20540 CDS
T01352
Name
(GenBank) putative RNase D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
req
Prescottella equi
Brite
KEGG Orthology (KO) [BR:
req00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
req03016
]
REQ_20540
Enzymes [BR:
req01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
REQ_20540
Transfer RNA biogenesis [BR:
req03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
REQ_20540
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
Motif
Other DBs
NCBI-ProteinID:
CBH48112
UniProt:
A0A3S5Y6C4
LinkDB
All DBs
Position
complement(2165961..2167298)
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AA seq
445 aa
AA seq
DB search
MVLVTRPALRRNPVGHASADVEIVPAHVEFWPMPDSTEPTTPVPLLVPADGVPPVIETAA
GVRDAAERLAAGTGPLAVDAERASGFRYSSRAYLVQLRRAGAGSFLLDPIPTAEDLEPLR
DAINGLEWVLHSADQDLPCLAELGLEPAALFDTELAGRLAGFERVGLAAIVERTLGLELR
KGHGAADWSTRPLPDAWLNYAALDVEVLLELREAMATELAAQGKTEWAAQEFEHVRLAGP
PQPKPDRWRRTSQIHSLKSPRQLAAVRELWTTRDEIARKRDISPSRILPDSAIVTAASAD
PKSIDTLRALPVFGGPRQRRSSRIWLGALERARALPQNELPPVNQPFTGPPPPSRWAKRD
PDAAARLATAKTGIAELSERVGVPVENLLSPDLVRRVCWEPPATPTTPDAEAAAAVDAAL
AAGGARPWQRDLMVPILVEALRAQA
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
gtggtcttggtcacacgtccagctttgcgtcgaaatccggtcggacacgcgtccgccgac
gtggaaatcgttcctgcccacgtagagttctggcctatgccagacagcaccgagcccacc
acacccgtgcccctgctggttccggccgacggtgtgccaccggtgatcgagaccgctgcc
ggggtccgcgacgcggccgaacgtctcgcggccggcacgggcccgctggccgtcgacgcc
gagcgcgcctccggcttccgttactcgtcgcgcgcctacctcgtgcagctgcggcgggcg
ggggccggatcgttcctgctcgacccgattccgaccgcggaggacctcgaaccgctgcgc
gacgcgatcaacggcctcgaatgggttctgcactccgccgaccaggacctgccgtgcctg
gccgaactcggcctcgaaccggccgccctgttcgacaccgaactggccggacgcctggcc
ggtttcgagcgcgtcggactggccgcgatcgtcgaacgcaccctgggcctcgaacttcgc
aagggccacggcgccgccgactggtcgacccgcccactgcccgatgcgtggctcaattac
gcggccctcgacgtcgaggtactcctggaactgcgggaggcgatggcgacggaactcgcc
gcacagggcaagactgaatgggccgcacaggaattcgagcatgtccggctggccggaccg
cctcaacccaagccggaccgctggcgccggacgtcacagatccacagcctcaagagcccg
cgccagctcgccgcggtccgggaactgtggaccacccgcgacgagatcgcgcgcaaacgc
gacatctcccccagccgcatcctgccggactcggcaatcgtcaccgccgcgagcgccgac
cccaagagcatcgacacactgcgggccttgccggtgttcggcgggccccgccagcgcagg
tcgtcacgcatctggctgggcgcgctcgagcgtgctcgcgccctgccccagaacgaactg
cccccggtcaaccagccgttcaccggaccgccgccaccgagtcgctgggccaagcgcgat
cccgacgccgcggcgcgactggccacggcgaagaccgggatcgccgaactgagcgaacgc
gttggggtacccgtcgagaacctgctgagcccggacctcgttcgccgcgtctgctgggag
ccgccggccacccccacgacgccggacgccgaagccgcggccgccgtcgacgccgcgctc
gctgcgggcggcgcccgcccgtggcagcgcgatctgatggtgccgatcctggtcgaggcc
ctccgcgcacaggcctga
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