Prescottella equi: REQ_36690
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Entry
REQ_36690 CDS
T01352
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta subunit RpoC
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
req
Prescottella equi
Pathway
req03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
req00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
REQ_36690 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
req03021
]
REQ_36690 (rpoC)
03400 DNA repair and recombination proteins [BR:
req03400
]
REQ_36690 (rpoC)
Enzymes [BR:
req01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
REQ_36690 (rpoC)
Transcription machinery [BR:
req03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
REQ_36690 (rpoC)
DNA repair and recombination proteins [BR:
req03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
REQ_36690 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
CBH49656
UniProt:
A0A3S5YAS7
LinkDB
All DBs
Position
complement(3916283..3920242)
Genome browser
AA seq
1319 aa
AA seq
DB search
MLDVNFFDELRIGLATAEDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVIVGVDEELRHNELSTLEAEMEVEKKTVADQRDADLEARAQKLEAD
IAELEAEGAKSDVRRKVKDGGEREMRQLRDRAQRELDRLDEIWTTFTKLSVKQLIVDESL
YRELVDRYGEYFTGAMGAESIQKLMENFDIEAEAESLRETIRSGKGQKKLRALKRLKVVA
AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVINEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLFHLTREVEGAIGAYQ
PAADGQPEQGVYSSPAEAQMAVDRGVLSVQAKIKVRLTHQRPPREIEAELFPEGWNFGDG
WMVETTLGRVMFNDLLPADYPFINEQMPKKRQATIINDLAERYPMIVVAQTVDKMKDTGF
YWATRSGVTVSISDVLVPPEKAQIMEQFEAQADQIEKKYQRGALNHTERNSALVKIWSEA
TDEVGKAMEAHFPDDNPIPMIVKSGAAGNMTQVRSLAGMKGLVTNPKGEFIPRPIKSSFK
EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREVDCGTERGILTTI
AEKAADGTMIRDAHVETSTYARTLAADAIDENGNVVVERGHDLGDPAIDALLAAGITQVK
VRSVLTCTTATGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGAA
GAADITGGLPRVQELFEARVPKGKAPITEVSGRVQLDDDDRFYKITVVPDDGGEEVVYDK
LSKRQRLRVFKHDDGSERLLSDGDHVDVGQQLLEGAADPHDVLRVMGPRQVQIHLVNEVQ
EVYRSQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLVERAEFEASNRRVVAEGGE
PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLIGLKENVIIGKLIP
AGTGINRYRNIQVQPTEEARAAAYAVPSYDDQYYSPEGFGTGTGAAVPLDDYGFGSDYR
NT seq
3960 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgatgaactccgcatcggtctcgcgaccgcggaggacatc
cgcaactggtcctacggcgaggtcaagaagccggagaccatcaactaccgcacgctcaag
cccgagaaggacggcctcttctgcgagaagatcttcggccccacccgggactgggagtgc
tactgcggcaagtacaagcgtgtccggttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgactcgcgccaaggtgcgtcgtgagcgcatgggccacatcgagctcgctgctccg
gtcacccacatctggtacttcaagggtgtgccgagccgtctcggctacctgctggatctg
gctccgaaggatctcgagaagatcatctacttcgccgcctacgtcatcgtcggtgtcgac
gaggagctgcgtcacaacgagctctccacgctcgaggccgagatggaggtcgagaagaag
accgtcgccgaccagcgtgacgccgatctcgaggcccgcgcgcagaagctcgaagcggac
atcgccgagctcgaggccgagggtgccaagtccgacgtccgccgcaaggtcaaggacggc
ggcgagcgcgagatgcgtcagctgcgtgaccgcgcccagcgcgagctggaccgcctcgac
gagatctggaccacgttcacgaagctgagcgtcaagcagctcatcgtcgacgagtcgctg
taccgcgagctggtcgaccgctacggcgagtacttcaccggcgcgatgggcgcggagtcc
atccagaagctgatggagaacttcgacatcgaggccgaggccgagtccctgcgcgagacc
atccgcagcggcaagggccagaagaagctgcgtgctctcaagcgcctcaaggtcgtcgcg
gcgttccagcagtcgggcaactcgccgatgggcatggtcctcgacgccgttccggtgatc
ccgccggagctgcgcccgatggtccagctcgacggtggtcgtttcgcgacgtccgacctc
aacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctcaagcgactgatcgacctc
ggtgctcccgagatcatcgtcaacaacgagaagcggatgctgcaggagtccgtcgacgcg
ctgttcgacaacggtcgtcgtggccggcccgtcacgggcccgggcaaccgtccgctgaag
tcgctgtccgatctgctcaagggcaagcagggccgcttccgtcagaacctgctcggtaag
cgtgtcgactactcgggccgttccgtcatcgtcgtcggcccgcagctcaagctgcaccag
tgcggtctgccgaagctgatggcgctcgagctgttcaagccgttcgtcatgaagcgtctg
gtcgacctcaaccacgcgcagaacatcaagtccgcgaagcgcatggtcgagcgccagcgt
ccgcaggtgtgggacgtcctcgaagaggtcatcaacgagcacccggtgctgctgaaccgt
gcacccacgctgcaccgtctcggcatccaggcgttcgagccgcagctcgtcgagggcaag
gccatccagctgcacccgctcgtgtgtgaggcgttcaacgccgacttcgacggtgaccag
atggccgtgcacctgccgctgtcggcagaggcgcaggccgaggctcgcatcctgatgctg
tcgtcgaacaacatcctgtcgccggcatcgggccgtccgctcgccatgccgcgtctggac
atggtcacgggtctgttccacctgacccgcgaggtcgagggtgcgatcggcgcctaccag
ccggccgccgacggccagccggagcagggtgtctacagctcgccggccgaggctcagatg
gccgtcgaccgtggcgtgctgtcggtgcaggcgaagatcaaggtgcgtctgacgcatcag
cgcccgccgcgtgagatcgaggcggagctgttccccgagggctggaacttcggcgacggc
tggatggtcgagaccacgctcggccgcgtgatgttcaacgatctgctcccggcggactac
ccgttcatcaacgagcagatgccgaagaagcgtcaggcgacgatcatcaacgatctggcc
gagcgttacccgatgatcgtggttgcgcagacggtggacaagatgaaggacaccggcttc
tactgggccacccgatccggcgtcacggtctcgatctccgacgtcctcgtgccgccggag
aaggctcagatcatggagcagttcgaggcgcaggccgaccagatcgagaagaagtaccag
cgcggtgctctcaaccacaccgagcgcaacagtgctctggtgaagatctggtccgaggcc
accgacgaggtcggtaaggccatggaggcccacttccccgacgacaacccgatcccgatg
atcgtgaagtccggcgccgccggcaacatgactcaggttcgctcgctcgccggtatgaag
ggcctggtgacgaacccgaagggtgagttcatcccgcgtccgatcaagtcctccttcaag
gagggcctgacggtcctcgagtacttcatcaacacgcacggtgctcgtaagggtctggcc
gataccgctctccgcaccgccgactcgggttacctgacccgtcgtctggtggacgtctcg
caggacgtcatcgtccgcgaggtcgactgtggcaccgagcgcggcatcctcaccacgatc
gcggagaaggcagccgacggcacgatgatccgcgacgcgcacgtcgagacctcgacgtac
gcccgcaccctggccgcggacgcgatcgacgagaacggcaacgtcgtcgtcgagcgtgga
cacgacctgggcgatccggcgatcgacgcgctgctcgcggcgggtatcacgcaggtgaag
gtccgttcggtcctgacctgcaccaccgccacgggtgtgtgtgccacgtgctacggccgc
tcgatggcgacgggcaagctcgtcgacatcggcgaggccgtcggtatcgtcgccgcacag
tcgatcggtgagcccggtacccagctgacgatgcgtaccttccaccagggtggtgcggcc
ggcgcggccgacatcaccggtggtctgccgcgtgtccaggagctgttcgaggcccgcgtc
cccaagggcaaggccccgatcaccgaggtctccggccgggtgcagttggacgacgacgac
cgcttctacaagatcacggtcgtcccggacgacggtggcgaagaggttgtgtacgacaag
ctgtcgaagcgtcagcgtctgcgtgtgttcaagcacgacgacggctccgagcgactgctg
tcggacggtgaccacgtggacgtcggtcagcagctgctcgagggcgctgccgacccgcac
gacgtgctgcgagtcatgggcccgcgtcaggtgcagatccacctcgtcaacgaggtccag
gaggtgtaccggagccagggtgtgtcgatccacgacaagcacatcgaggtcatcgtgcgc
cagatgctgcgtcgcgtcacgatcatcgactcgggctcgacggagttcctgcccggctcg
ctggtcgagcgtgcggagttcgaggcgtccaaccgtcgcgtcgtcgccgagggcggcgag
ccggcggccggacgtccggtgctgatgggtatcacgaaggcgtcgctggcgaccgattcg
tggctgtcggcggcttcgttccaggagaccacccgcgtgctgaccgatgcggcgatcaac
tgccgctcggacaagctgatcggtctcaaggagaacgtgatcatcggcaagctgatcccg
gccggcaccggcatcaaccggtaccggaacatccaggttcagcccaccgaggaggcacgc
gcggctgcgtacgcggttccgtcctacgacgaccagtactacagcccggagggcttcggc
accggcaccggcgctgcggttcctctggacgactacggattcggtagcgactaccgctga
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