Rhodococcus erythropolis PR4: RER_05130
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Entry
RER_05130 CDS
T00881
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
rer
Rhodococcus erythropolis PR4
Brite
KEGG Orthology (KO) [BR:
rer00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rer03032
]
RER_05130 (topA)
03400 DNA repair and recombination proteins [BR:
rer03400
]
RER_05130 (topA)
Enzymes [BR:
rer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
RER_05130 (topA)
DNA replication proteins [BR:
rer03032
]
Prokaryotic type
DNA Topoisomerases
RER_05130 (topA)
DNA repair and recombination proteins [BR:
rer03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
RER_05130 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
HC2
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
BAH31221
UniProt:
C0ZNG9
LinkDB
All DBs
Position
565887..568823
Genome browser
AA seq
978 aa
AA seq
DB search
MAKADNGSGQGASGNPRRLVIVESPTKARKIAPYLGKDYVVEASVGHIRDLPRGAADVPA
KYKGESWARLGVNVDHDFEPLYVVSPEKKGKVAELKSLLKDADELFLATDPDREGEAIAW
HLLETLKPKIPVRRMVFHEITEPAIRAAAEDTRELDTDLVDAQETRRILDRLYGYEVSPV
LWKKVMPKLSAGRVQSVATRVIVQRERERMAFKSASYWDISATLDAGAEASPRSFGARLV
SVDGSRVASGRDFGADGKLKGSAVTVLDEAYARRLAEALQGVDLTVSSAEDKPYTRKPYP
PFMTSTLQQEAGRKLRFTSERAMRIAQRLYENGYITYMRTDSTTLSESAIAAARAQATEL
YGPEYVHPTPRQYTRKVKNAQEAHEAIRPAGDVFQTPGQLHSKLDSDEFKLYELIWQRTV
ASQMADARGTTLTLRISGTAGTGEDCTFSASGRTIVFAGFLKAYVESVDEEAGGQSDDAE
SRLPVLVKGQEVTATKLDPDGHSTNPPARYTEASLIKTLEELGIGRPSTYSSIIKTILDR
GYVYKRGSALVPSWVAFAVIGLLEVHFGRLVDFDFTAGMEDDLDAIAGGREQRGNWLSSF
YFGGETGAEGSVAREGGLKKMVGVNLEEIDAREVNSIRLFDDAEGREVHVRVGRFGPYLE
RMVQNPDDPEGDLISQRANLPDDLPPDELTPEYAEKLFSTPQEGRKLGVDPLTGHEIVAK
EGRFGPYVTEILPEPPAEPEPDIVPVSAPEPEEISSGSTKTAVKKAAAKKAPAKKAAKKV
AGPKPRTGSLLKSMDLATITLEDALRLLSLPRVVGVDPESKEEITAQNGRYGPYLKKGTD
SRSLANEEQMFTVTLDEALKIYAEPKRRGRQASATPPLRELGVDPVSEKPMVIKDGRFGP
YVTDGETNASLRKDDDVESISDARASELLADRRARGPVKKKAAAKKAPAKKAAAKKTAAK
KAPAKKAAAKKAPAKKDS
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
gtggctaaagcggacaacggcagcggtcagggagcgtccggtaaccctcgtcgcctcgtg
atcgtcgagtcaccgaccaaggcgcgcaaaatcgctccctacctcggtaaggactacgtc
gtagaggcatcggtcggtcacattcgcgacctgccgcgaggcgcagcagacgttccggcc
aagtacaagggcgagtcatgggcccgtctcggcgtcaacgtcgatcacgacttcgagccg
ctctatgtcgtgagcccggaaaagaagggcaaggtcgccgaactcaagtctctgttgaag
gacgccgacgagctcttcctcgcaactgaccccgaccgtgagggcgaggcaatcgcctgg
catctcctcgagactctcaagcccaagattccggttcgtcgaatggtcttccacgagatc
accgagccggcaatccgtgctgccgccgaagacacccgcgaactcgacaccgacctcgtc
gatgctcaggaaacccgccgcatcctcgaccgtctctacggttacgaggtcagcccggtt
ctctggaagaaggtcatgccgaagctctcggccggccgcgtccagtcggtggccactcgc
gtcatcgtccagcgtgaacgcgagcgcatggcgttcaagtcggcgtcgtactgggacatt
tccgcgacgctcgacgccggtgcagaggccagcccgcgtagtttcggtgctcgcctcgtc
tccgtcgacggttcgcgtgtcgcctccggtcgcgatttcggagctgacggaaagctcaag
ggcagcgcggtcaccgtgctcgacgaggcgtacgcgcgtcgtctggcggaagcgttgcag
ggcgtcgacctcacggtttcctccgccgaggacaagccgtacacgcgcaagccttacccg
ccgttcatgacgtcgacgctccagcaggaagccggacgcaaacttcgtttcacgtccgag
cgcgccatgcgtatcgcgcagcgtctgtacgaaaacggctacatcacctacatgcgtacc
gactcgacgacgctctcggagtcggcgatcgcagccgctcgtgcgcaggccaccgagttg
tacggtccggagtacgtccatccgacgccgcgtcagtacacccgcaaggtcaagaacgcg
caggaagcgcacgaggcgatccgccccgccggcgacgtgttccagaccccgggtcagctg
cactccaagctcgattccgacgagttcaagctgtacgaactgatctggcagcggaccgtc
gcttcacagatggccgacgcccgcggtacgacgctgacgctccgcatctccggcacggca
ggcaccggcgaggactgcacgttctccgcttcgggtcgcaccatcgtgttcgccggcttc
ctcaaggcttacgtcgaaagtgtcgacgaagaagccggcggtcagtccgacgacgccgaa
tccaggcttccggtattggtcaagggccaggaagtcacggccaccaagctcgatccggac
gggcacagcaccaacccgcccgctcgctacacagaagccagcctgatcaagacgctcgaa
gaactcggcatcggtcgtccttcgacctactcgtcgatcatcaagaccatcctcgatcgc
ggatacgtctacaaacgtggcagcgcgctggttccgtcctgggtggcgtttgccgtcatc
ggactgctcgaggtgcacttcggccggctggtcgacttcgacttcacggcaggaatggaa
gacgatctcgacgcgatcgccggcggccgtgagcagcgtggcaactggctgagcagcttc
tacttcggcggcgagacaggcgcagagggttcggtcgcccgcgagggcgggctgaagaag
atggtcggtgtcaacctcgaggagatcgacgctcgcgaggtcaactccatccgtctcttc
gacgacgccgagggccgcgaggttcacgtccgcgtcggccggttcggcccgtatctcgag
cgcatggttcagaacccggacgatcccgaaggcgatctgatctcgcagcgggcaaatctt
cccgacgacctgccgccggacgagctcactcccgagtacgccgagaaactgttctcgacg
cctcaagagggccgcaagctgggcgtcgacccactgacgggccacgagatcgtcgcgaag
gaaggccgcttcggtccctacgtgaccgagatcctgcccgaaccgccggccgagccggaa
ccggacatcgttcccgtctccgctcccgagccggaagaaatcagttcgggcagtaccaag
actgcggtgaagaaggccgcagccaagaaggcgcccgcgaagaaggctgccaagaaggtc
gcgggccccaagccgcggacgggatcgctgctcaagtccatggatttggcgacgatcacg
ttggaagatgcgcttcgtctgctgtcgcttccgcgcgtcgtgggtgtcgaccccgaatcc
aaggaagagatcaccgcgcagaacggccgttacggtccgtacctgaagaagggcacggat
tcacgctcgctcgccaacgaagagcagatgttcaccgtcacgctcgacgaggccctcaag
atctacgccgagccgaagcgtcgtgggcgtcaggcgtcggcaacgcctccgttgcgtgag
ttgggcgtcgatccggtcagcgagaagccgatggtgatcaaggacggccgtttcggtccg
tacgtcaccgacggcgagaccaacgccagcctccgcaaggacgacgacgtcgaatccatt
tccgatgctcgtgcgtcggagttgctcgctgatcgtcgtgcgcgcggcccggtcaagaag
aaggctgctgccaagaaggctccggcaaagaaggccgctgccaagaaaacagccgcaaaa
aaggccccggccaagaaggctgccgccaagaaggctcccgcgaagaaggactcgtaa
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