Rhodococcus erythropolis PR4: RER_24100
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Entry
RER_24100 CDS
T00881
Symbol
hup
Name
(GenBank) putative DNA-binding protein HU
KO
K03530
DNA-binding protein HU-beta
Organism
rer
Rhodococcus erythropolis PR4
Brite
KEGG Orthology (KO) [BR:
rer00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rer03032
]
RER_24100 (hup)
03036 Chromosome and associated proteins [BR:
rer03036
]
RER_24100 (hup)
03400 DNA repair and recombination proteins [BR:
rer03400
]
RER_24100 (hup)
DNA replication proteins [BR:
rer03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
RER_24100 (hup)
Chromosome and associated proteins [BR:
rer03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
RER_24100 (hup)
DNA repair and recombination proteins [BR:
rer03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
RER_24100 (hup)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HC2
HU-HIG
HU-CCDC81_bac_2
HU-CCDC81_euk_2
Motif
Other DBs
NCBI-ProteinID:
BAH33118
UniProt:
C0ZXN3
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All DBs
Position
2605894..2606580
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AA seq
228 aa
AA seq
DB search
MNKAELIDVLTEKLGSDRRTATDAVEHVVDTIVRAVHRGESVTITGFGVFEQRRRAARVA
RNPRTGETVKVKPTSVPAFRPGAQFKAVIAGGQKLPATGPAVKRGVAAPATKAAAKKAAA
KKTAAKKAPAKKAPAKTAAKKTVAAKAPAKKAPAKTAAKKTVATKAPAKKAPAKTAAKKT
VATKAPAKKAPAKTAAKAPAKKAPAKKAPAKTAAKKAPAKKAPAKRGK
NT seq
687 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaggcagagctcatcgatgttctgactgaaaagctgggttcggacaggcgcaca
gcgaccgacgcagtggagcacgtcgtggacaccatcgtccgcgccgtccaccgtggcgag
agcgtgaccatcaccggcttcggagtcttcgagcagcgtcgtcgtgcagcacgtgttgca
cgcaacccgcgtacgggcgagaccgtcaaggtcaagccgacgtcggttccggctttccgt
ccgggtgcgcagttcaaggctgttatcgctggtggacagaagcttccggccaccggcccg
gcagtcaagcgtggcgtagcagcaccggccacgaaggctgcagccaagaaggctgctgcc
aagaagaccgcagccaagaaggctccggcaaagaaggctccggccaagaccgcagccaag
aagacggttgccgcgaaggctcccgccaagaaggctccggccaagaccgcagccaagaag
acggttgccaccaaggctcccgccaagaaggctccggccaagaccgcagccaagaagacg
gttgccaccaaggctcccgccaagaaggctccggccaagaccgcagccaaggctccggcc
aagaaggctccggccaagaaggctccggccaagaccgcagccaagaaggctccggccaag
aaggctccggccaagcgcggaaagtag
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