KEGG   Rhodococcus erythropolis PR4: RER_24100
Entry
RER_24100         CDS       T00881                                 
Symbol
hup
Name
(GenBank) putative DNA-binding protein HU
  KO
K03530  DNA-binding protein HU-beta
Organism
rer  Rhodococcus erythropolis PR4
Brite
KEGG Orthology (KO) [BR:rer00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rer03032]
    RER_24100 (hup)
   03036 Chromosome and associated proteins [BR:rer03036]
    RER_24100 (hup)
   03400 DNA repair and recombination proteins [BR:rer03400]
    RER_24100 (hup)
DNA replication proteins [BR:rer03032]
 Prokaryotic type
  DNA Replication Initiation Factors
   Initiation factors (bacterial)
    RER_24100 (hup)
Chromosome and associated proteins [BR:rer03036]
 Prokaryotic type
  Nucleoid associated proteins
   HU (heat unstable protein)
    RER_24100 (hup)
DNA repair and recombination proteins [BR:rer03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Supressor
      RER_24100 (hup)
SSDB
Motif
Pfam: Bac_DNA_binding HC2 HU-HIG HU-CCDC81_bac_2 HU-CCDC81_euk_2
Other DBs
NCBI-ProteinID: BAH33118
UniProt: C0ZXN3
LinkDB
Position
2605894..2606580
AA seq 228 aa
MNKAELIDVLTEKLGSDRRTATDAVEHVVDTIVRAVHRGESVTITGFGVFEQRRRAARVA
RNPRTGETVKVKPTSVPAFRPGAQFKAVIAGGQKLPATGPAVKRGVAAPATKAAAKKAAA
KKTAAKKAPAKKAPAKTAAKKTVAAKAPAKKAPAKTAAKKTVATKAPAKKAPAKTAAKKT
VATKAPAKKAPAKTAAKAPAKKAPAKKAPAKTAAKKAPAKKAPAKRGK
NT seq 687 nt   +upstreamnt  +downstreamnt
atgaacaaggcagagctcatcgatgttctgactgaaaagctgggttcggacaggcgcaca
gcgaccgacgcagtggagcacgtcgtggacaccatcgtccgcgccgtccaccgtggcgag
agcgtgaccatcaccggcttcggagtcttcgagcagcgtcgtcgtgcagcacgtgttgca
cgcaacccgcgtacgggcgagaccgtcaaggtcaagccgacgtcggttccggctttccgt
ccgggtgcgcagttcaaggctgttatcgctggtggacagaagcttccggccaccggcccg
gcagtcaagcgtggcgtagcagcaccggccacgaaggctgcagccaagaaggctgctgcc
aagaagaccgcagccaagaaggctccggcaaagaaggctccggccaagaccgcagccaag
aagacggttgccgcgaaggctcccgccaagaaggctccggccaagaccgcagccaagaag
acggttgccaccaaggctcccgccaagaaggctccggccaagaccgcagccaagaagacg
gttgccaccaaggctcccgccaagaaggctccggccaagaccgcagccaaggctccggcc
aagaaggctccggccaagaaggctccggccaagaccgcagccaagaaggctccggccaag
aaggctccggccaagcgcggaaagtag

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