Rhodococcus erythropolis PR4: RER_27330
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Entry
RER_27330 CDS
T00881
Name
(GenBank) conserved hypothetical protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
rer
Rhodococcus erythropolis PR4
Pathway
rer03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rer00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RER_27330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rer03019
]
RER_27330
Messenger RNA biogenesis [BR:
rer03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RER_27330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RMMBL
Lactamase_B_2
Lactamase_B
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
BAH33441
NITE:
RER_27330
UniProt:
C0ZYK6
LinkDB
All DBs
Position
2936874..2938466
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AA seq
530 aa
AA seq
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MTVFEHRGKLLIVDCGVLFPEDQQPGVDLILPDFRYIEDRMDDVEAVILTHGHEDHIGAL
PFLLRLRADIPVIGAKFTLALVAAKCREHRLRPNLVEVVEGNTTTHGPFDCEYFAVNHSI
PDALAIAIRTDAGVVLHTGDIKLDQLPLDGRLTDLAGFSRLGDEGVDLFLVDSTNAEVPG
FVTPEREIGGVLDNVIGKAKQRVIVASFASHVHRIQQVVDVAARYNRRIVFVGRSMVRNM
QIAQDLGYLTVPDGLVVDIDTAATLPDDRLVLISTGSQGEPLAALSRMARGEHRQINIRA
NDLVVLASSLIPGNENSVFAVVNGLAKRGATVVTQQSAKVHVSGHASAGELLYLYNAVRP
TNAMPVHGEWRHLRANAALAKATGVPEERIVLAEDGVVVDMVDGLAEIVGRVPVGHVYVD
GLSVGDVGEPTLSDRLVLGEGGFIAITIVINESTGRAVSTPEVSGRGFSDDPTALKAAAD
LVESDLARLASEGVIDAHRIAQSVRRVVGRWVADKYRRRPMIIPTVIAVP
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atgacggtgttcgagcaccgcggcaagttgctgatcgtcgactgcggtgtgctgttcccc
gaggaccagcagcccggcgtcgacctgatcctcccggacttccgctacatcgaagaccgt
atggacgacgtcgaagccgtcatcttgactcacggccacgaggaccacatcggtgctctg
ccgttcttgctgcgcttgcgcgcggacataccggtcatcggcgcgaagttcactctcgcc
ctcgttgccgccaagtgccgcgagcatcgcctgcgaccgaacctcgtcgaggtcgtcgaa
ggaaacaccaccactcacggcccgttcgactgcgagtacttcgccgtcaaccactcgatt
cccgacgcgctcgcaatcgcgattcgcaccgacgccggagttgtactgcacaccggtgac
atcaagctcgatcagctgcctctcgacggccgcctgaccgacctcgccggtttctcccgc
ctgggcgacgagggtgtcgacctgttcctcgtggactcgaccaacgccgaggtcccggga
ttcgtcacgcccgagcgtgaaatcgggggagtgctcgacaacgtcatcggcaaggcgaag
cagcgcgtcatcgtggcatcgttcgccagccacgtgcaccgcatccagcaggtcgtcgac
gttgccgctcggtacaaccgtcgcatcgtcttcgtcggccgctcgatggtccgcaacatg
cagatcgcccaggatctcggctacctcacggtgccagacggcctggtcgtcgacatcgac
accgccgccacccttcccgacgatcgcctcgttctcatctccacgggttcgcagggtgag
ccgttggcagcgctctcgcggatggcgcgcggcgagcaccgccaaatcaacatccgggcc
aacgacttggtcgttctcgcgtcctccctgatcccgggcaacgagaactccgttttcgcc
gtggtcaacggcttggccaagcgcggtgccaccgtcgtgactcagcagagcgccaaggtt
cacgtctcgggccacgcgtccgccggtgagctgctctacctgtacaacgcggttcggccc
accaacgccatgcccgtccacggtgaatggcggcacctgcgtgccaacgccgcccttgcc
aaggccaccggcgttccggaagagcgcatcgtgctggccgaggacggcgtcgtggtcgac
atggtcgacggcctcgccgagatcgtcggacgcgtaccggtcggacacgtctacgtcgac
ggtctttcagtcggcgacgtcggcgagccgacgctctccgatcgcctcgtactcggtgaa
ggtggcttcatcgccatcaccatcgtcatcaacgagtcgacaggacgcgcagtcagcact
cccgaggtgtccggtcgcggcttctccgacgatccgacggcactcaaggccgccgcggat
ctcgtggaatcggacctggcccggttggcgagcgaaggcgtcatcgacgctcatcgcatc
gcgcagtccgtgcgccgcgtcgtcggacgctgggtcgcggacaagtaccgccgccgtccg
atgatcattccgacggtcatcgcggttccgtag
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