Rhodococcus erythropolis PR4: RER_35310
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Entry
RER_35310 CDS
T00881
Symbol
dnaE
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rer
Rhodococcus erythropolis PR4
Pathway
rer03030
DNA replication
rer03430
Mismatch repair
rer03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rer00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RER_35310 (dnaE)
03430 Mismatch repair
RER_35310 (dnaE)
03440 Homologous recombination
RER_35310 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rer03032
]
RER_35310 (dnaE)
03400 DNA repair and recombination proteins [BR:
rer03400
]
RER_35310 (dnaE)
Enzymes [BR:
rer01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RER_35310 (dnaE)
DNA replication proteins [BR:
rer03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RER_35310 (dnaE)
DNA repair and recombination proteins [BR:
rer03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RER_35310 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
MCM10_OB
Motif
Other DBs
NCBI-ProteinID:
BAH34239
UniProt:
C1A0V4
LinkDB
All DBs
Position
complement(3870279..3873887)
Genome browser
AA seq
1202 aa
AA seq
DB search
MAVAERVGNAAYTRSRSQTFREAHVADSFVHLHNHTEYSMLDGAAKVGAMFEEAARLEMT
AVGMTDHGNMYGASQFYNEAKSAGIKPIIGIEAYIAPESRFNTKRVLWGDRSQKSDDVSG
SGAYTHMTMVAENATGLRNLFKLSSLASIEGQLGKWPRMDEELIAAHAEGIIATTGCPSG
EIQTRLRLGHDREALEAAAKWQEIWGPDNFFLELMDHGLSIERRVREGLLDIGKQLGIPP
LATNDCHYVTKDAAENHEALLCIQTGKTLSDPTRFKFDGDGYYLKSAAEMRAIWDNEVPG
ACDNTVAIGERVQSYEDVWAFHDRMPIFPVPEGHTQQTFLRAEVMRGLDRRFPSGPPQEY
LARADYEIGVINEMGFPAYFLVVGDLINHAKDVGIRVGPGRGSAAGSLVAYAMGITNIDP
IPYGLLFERFLNPERVSMPDIDIDFDDRRRGEMVRYATDKWGNDKVAQVITFGTIKTKAA
IKDSARVQFGKPGFAIADQITKALPPPIMAKDISVSGITDPKHERYKEAVEVRALIDSSP
DVAKIYKTAVGLEGLIRNAGVHACAVIMSSEPLTDAIPVWKRAQDGAIITGWDYPSCEAI
GLLKMDFLGLRNLTVIGDTLENIKANRGIDLDLDTLPMDDAATYELLARGDTLGVFQLDG
GGMRELLKLMQPTGFGDIVAALALYRPGPMGVDAHISYAKRKNALEDVKPIHPELEEPLA
EILSETYGLIIYQEQIMQLAQKVAGYTLGQADLLRRAMGKKKLSELEKAYAGFRQGMLDN
NFSEAAIKALWDTVLPFAGYAFNKSHSAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDK
DKSAIYLADCRKLGITVLPPDVNESRVDFATVGDDIRFGMGSVRNVGANVVASIIKARTE
KSKFTDFSDYLGKIDAMACNKKVTESLIKAGAFDSLGHPRKGLMLVHADAIDSVMSTKKA
EAIGQFDLFGGAEADESITSVFDVKIPEEEWDSKHRLALEREMLGLYVSGHPLNGVEHIL
RQQSDTSIAAILEGGVQDGAQVTLGGIIASVDRRVNKNGLTWCIVQLEDLVGGIEVLFFP
QAYAVYGMDIAEDAIVLVKARVSIRDDRMSLIGNDLAVPDISAIGVARPLSVSLPLRQCT
KDKLSALKQVLTRHPGTSDVHVRLIGGTEISLWKVDDVLRVEPSSALMGDLKALLGPSCL
TV
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
atggcggtcgccgaacgtgtcggcaacgcggcatacactcgatctcgctcccagaccttc
agagaggcgcacgtggctgactcgttcgtacatcttcacaatcacaccgagtactcgatg
ctcgacggtgcggccaaggtcggcgccatgttcgaggaggccgctcgtctcgaaatgacc
gctgtcggcatgaccgaccacggaaacatgtacggcgccagccagttctacaacgaggcc
aagagtgccggcatcaagccgatcatcggcatcgaggcgtacatcgcacccgagtctcgc
ttcaacaccaaacgagttctctggggagatcgcagccagaagtccgacgacgtctccggt
agcggtgcgtacacgcacatgacgatggtggccgagaacgccacggggctccgaaacctc
ttcaagctgtcttctctcgcgtcaatcgagggacagctcggcaagtggcctcgcatggac
gaggaactcatcgcggcgcacgccgagggcattatcgccaccacgggctgcccgtccggt
gagatccagacgcgccttcgtctcggccacgatcgcgaggctctcgaagctgccgcgaag
tggcaggagatctggggaccggacaacttcttcctcgaactgatggatcacggtctctcg
atcgagcgccgggtgcgcgagggtctgctcgacatcggcaagcaactcggtatcccgcca
cttgccaccaacgactgccactacgtcaccaaggacgccgccgagaaccacgaggcgctg
ctctgtatccagaccggcaagacgctgtccgaccccactcgcttcaagttcgacggcgac
ggctactacctcaagtccgctgccgagatgcgcgccatctgggacaacgaagtaccgggg
gcgtgcgacaacaccgtggccatcggcgagcgtgtgcagtcgtacgaggacgtgtgggcg
ttccacgaccgcatgccgatcttcccggtcccggagggtcacacgcagcagaccttcctg
cgcgccgaggtgatgcgcggactcgatcgccgcttcccgagcggacctccgcaggagtac
ctcgcccgcgccgactacgagatcggcgtcatcaacgaaatgggcttcccggcctacttc
ctggtggtcggcgacctgatcaaccacgccaaggacgtcggaattcgcgtcgggcccggc
cgtggatcggctgccggttcgttggtggcctacgcgatgggtatcaccaacatcgacccc
atcccgtacgggttgctgttcgagcgattcctcaaccccgagcgtgtgtccatgcccgat
atcgatatcgacttcgatgatcgccgtcgcggcgagatggttcgctacgcgacggacaag
tggggcaacgacaaggtcgcccaggtcatcaccttcggcaccatcaagaccaaggctgcc
atcaaggactcggctcgcgtccagttcggcaagccgggctttgccatcgccgatcagatc
accaaggcgctcccgccgcccatcatggccaaggacatctcggtttccggtatcaccgat
ccgaagcacgagcggtacaaggaggcagtcgaggttcgagcgctcatcgactccagcccg
gacgtcgcgaagatctacaagaccgcggtgggtctggaagggctgatccgcaacgccggt
gtgcacgcctgcgcggtcatcatgtcgtccgaaccgctcaccgacgcaatcccggtctgg
aagcgcgcccaggacggcgccatcatcaccggttgggactacccctcgtgtgaagctatc
ggcctgctcaagatggacttcctcggtctgcgaaacctcacggttatcggcgacacgctc
gagaacatcaaagccaaccgcggcatcgacctcgacctcgacactttgccgatggacgat
gcggcaacatacgaactgctcgcccgcggcgacactctcggtgtgttccagctcgacggc
ggcggcatgcgcgagttgctgaaactgatgcagcccaccggattcggcgacatcgtcgcc
gcattggcgctgtatcgaccgggaccgatgggtgtggacgcccacatctcgtacgccaag
cgcaagaacgccttggaagacgtcaagccgattcaccccgagttggaggagccgctcgcg
gagatcctctcggaaacgtacggcctgatcatctaccaggagcagatcatgcaactggcg
cagaaggtggccggttacaccctgggtcaggccgacttgctgcgtcgcgccatgggtaag
aagaagctgtccgagctggaaaaggcctacgccggcttccggcagggcatgttggacaac
aacttcagcgaagcggccatcaaggcgctgtgggacacggtccttcccttcgccgggtac
gcgttcaacaagtcgcactccgccggctacggactcgtgtcgtactggactgcgtacctc
aaggcgaactacccggccgagtacatggcaggtctgctcacatccgtcggtgacgacaag
gacaagtccgcgatctatctcgccgactgccgcaagttgggcatcaccgttctcccgccg
gacgtcaacgagtcacgcgtcgacttcgcgaccgtcggcgacgacatccgtttcggtatg
gggtcggtgcgcaacgtcggcgccaacgtcgttgcctcgatcatcaaggcgcgcacggag
aaatcgaagttcaccgatttctccgactatctcggcaagatcgacgcgatggcttgcaac
aagaaggtcaccgaatctctcatcaaggccggtgctttcgactcgttgggtcacccgcgc
aagggcctgatgttggtccatgccgacgccatcgattccgtgatgagcaccaagaaggca
gaggcgatcggacagttcgacctcttcggcggtgccgaggcggacgagtcgatcacctcg
gtgttcgacgtcaagattccagaggaggagtgggactccaagcatcgcctggcactcgaa
cgagagatgctggggctgtatgtttccggtcacccgctcaacggcgtcgagcacattctt
cgccagcagtccgacacgtccatcgccgcgatactcgaaggcggcgttcaggacggtgcc
caggtaactctcggcggcatcatcgcctcggtggaccgccgggtcaacaagaacggtctg
acctggtgcatcgtgcagctcgaagatctcgtgggtggaatcgaggtgctgttcttccca
caggcgtacgcggtgtacggaatggacatcgccgaggatgccatcgtgttggtcaaggct
cgcgtctcgatccgagacgatcggatgtcgctgatcggcaacgaccttgcggtgcctgat
atttcggcgatcggggtcgcacgccccctgtcggtctcactgccccttcggcaatgcacc
aaggacaagctcagtgctctcaagcaggtgctgacgaggcaccccggaacgtccgacgtc
catgtccggctgatcggcggaaccgagatcagcttgtggaaggtcgacgacgtccttcgg
gtcgaaccgtcctcggcgctgatgggcgacctgaaggcattgctcgggccgagctgtctg
acggtctga
DBGET
integrated database retrieval system
