Rhodococcus erythropolis PR4: RER_37840
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Entry
RER_37840 CDS
T00881
Name
(GenBank) putative ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rer
Rhodococcus erythropolis PR4
Pathway
rer03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rer00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RER_37840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rer03019
]
RER_37840
03400 DNA repair and recombination proteins [BR:
rer03400
]
RER_37840
Enzymes [BR:
rer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RER_37840
Messenger RNA biogenesis [BR:
rer03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RER_37840
DNA repair and recombination proteins [BR:
rer03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RER_37840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
RecQ_Zn_bind
HEM4
Motif
Other DBs
NCBI-ProteinID:
BAH34492
NITE:
RER_37840
UniProt:
C1A1K7
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All DBs
Position
4129407..4131536
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AA seq
709 aa
AA seq
DB search
MSAGSCTMGSMTTATAPAMRDEAERLLRELAGPDARLREDQWTAIEALVVQRKRALVVQR
TGWGKSAVYFISAKLLRAAGHGPTVIVSPLLALMRNQVSSAERAGVRAATINSGNVTEWD
DIHARVAANDLDVLLVSPERLNNPDFRDQVLPSLAADAGLVVVDEAHCVSDWGHDFRPDY
RRIRTLIAELGEGIPVLATTATANNRVVEDVSAQLGVGGEETLVLRGGLERESLHLSVVH
IPEATARAAWLADMLETLPGSGIIYTLTVSAARDLASLLSERGHTVAAYTGQTDPTERES
LEQDLLGNRVKALVATSALGMGFDKPDLGFVVHLGAPSSPISYYQQVGRAGRSTDRADVI
LLPGAEDKQIWSYFASVAFPREHLVRSVIEHLDTEKATSTPALEPLVELNRTRLEMVLKV
LDVDGAVKRVKGGWISTGEPWVYDAERYGRLDDARQAEQAAMVEYQSITTCRMTFLREQL
DDPGLTSENSQCGRCDNCTGNRYDTTVDTTALDETRARLQRPGFDLESRKMWPTGLSKLG
VKLSGKITEGPETGRILGRMSDLGWGQRLRALFDGPDAEVPDAVVSACISVLAAWNWAER
PTGVMALESTTHPLLVSSLAAKLAEVGRLTDLGTLRLRPDHPPVSAANSAYRVSGLVDVW
EVPDMSIHQGPILLVDAIADTGWTFTMAARALRQAGAHSVLPLALASPK
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
gtgtcggcagggtcgtgcaccatggggtccatgaccaccgccactgccccagccatgcgc
gacgaagccgagcgactgctccgtgaactcgcggggccggatgcccgcctacgcgaggac
cagtggacggccatcgaggcgctggtggtgcaacgcaagcgtgccctcgtcgtccagcgg
accggctggggcaagtctgcggtctacttcatctcggcgaagctgctccgggcagcaggt
catggccccacggtcatcgtctctccgttgttggccctgatgcgaaaccaggtcagttct
gccgagcgtgccggggtgcgagccgcgaccatcaactcgggcaatgtcacggagtgggac
gacatccacgcccgcgttgcagccaacgatctcgacgtactgctggtcagccccgagcgc
ctcaacaaccccgacttccgcgatcaggttctcccgtccctggcagctgatgccggcttg
gtagtggttgacgaggctcactgcgtttccgactggggacacgacttccgtcccgactat
cggcgtatcaggacgttgatcgccgaactgggcgagggcattcccgtcctcgcgaccacg
gctacggcaaacaaccgcgtcgtcgaggacgtgtccgcgcaactcggcgtcggcggcgag
gaaactctcgtacttcgtggcgggctcgaacgcgagtcacttcacctttccgtggttcac
attcccgaggcgacggcgcgcgctgcctggctcgccgacatgctcgagacgctgccggga
tcgggcatcatctacacgctgacggtttcggccgctcgcgacctcgcaagcctgctctcc
gagcgcggtcataccgtcgccgcctacacgggccagaccgatcccaccgaacgtgaatcc
ctcgagcaggacctgttgggcaatcgcgtcaaggctctggtggccacctcggccctcggg
atgggcttcgacaagcctgatctcgggttcgtcgtccacctcggcgcaccgtcgtcacct
atctcgtactaccagcaggtgggccgcgccgggcgttccaccgacagggcagacgtgatc
ctgctgccgggcgccgaggacaagcagatctggagctacttcgcctcggtcgccttcccc
cgcgagcatctggtccgcagcgtcatcgagcacctcgacaccgaaaaggccacgtcgaca
ccggcactcgaaccgctggtggagctcaatcgcacccgtctcgaaatggtcctcaaagtt
ctcgacgtcgacggcgcggtcaaacgagtcaagggcggttggatcagcaccggagaacct
tgggtgtacgacgccgagcgttacggtcgactcgacgacgctcgccaggccgagcaggct
gcaatggtcgagtaccagagcatcaccacgtgccgaatgaccttcctgcgtgaacaactc
gacgatcctggtctgacatcggagaactcacagtgtggacgctgtgacaactgcaccggc
aatcgctacgacaccactgtcgacaccaccgccctcgacgagactcgggcgcgcttgcag
cgccccggattcgacctggagtcgcgcaagatgtggccgaccggcctgagcaagctgggc
gtcaagctgtccgggaagatcaccgagggaccggaaaccgggcgcattctcggacggatg
tcggacctgggctggggccaacgtctccgcgcgcttttcgacggacccgacgcggaggta
cccgatgcggtggtcagcgcgtgtatcagcgttctggccgcctggaattgggccgagcgc
cccaccggtgtcatggccctcgaatccacgacgcatccattgctggtgtcgagcctggct
gccaagctggccgaggtcgggcgattgaccgacctgggcacccttcgcttgcgacccgac
caccctccggtgtcggcagcgaactccgcctatcgcgtgtccggactggtcgatgtttgg
gaagtcccggacatgagtatccatcagggaccgatacttcttgtcgacgcaatcgccgac
accggttggactttcacgatggccgcacgcgcacttcggcaggcaggtgcgcattcggtc
ctcccattggcgctcgcgagccccaaatag
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