Rhodococcus erythropolis PR4: RER_37950
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Entry
RER_37950 CDS
T00881
Name
(GenBank) putative ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rer
Rhodococcus erythropolis PR4
Pathway
rer03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rer00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RER_37950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rer03019
]
RER_37950
03009 Ribosome biogenesis [BR:
rer03009
]
RER_37950
Enzymes [BR:
rer01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
RER_37950
Messenger RNA biogenesis [BR:
rer03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RER_37950
Ribosome biogenesis [BR:
rer03009
]
Prokaryotic type
rRNA processing factors
RER_37950
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
DUF8067
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
BAH34503
UniProt:
C1A1L8
LinkDB
All DBs
Position
complement(4140082..4143381)
Genome browser
AA seq
1099 aa
AA seq
DB search
MTTRLLGWTRPGAEETYVADQSPTESDSSTTPEFPDKMRVHALAKLLGVTSKQVLAEAAA
LGTELRSAQSSLQRDVAQRIHASLTSAAEAIEPVVAELDTLIDPVVEAPVAEAPVAEEPV
AEAPAEKPVRARRTRKKVVVEEPAAEEPSAEEAVDPAVAEISAGLDAAAALQSKEAEQSD
LFTSFEAPQTHQPEVAPAAPQVPLFLQPDLEAAEVAPRRRRARREPAAPAVVEEKQTTTE
AETVVPEAAPVAVPAVEEPAVTAPQTEGESAESEDEDDDQPRRRRRGRRGRGRGRGEQGG
EQGSDEESDTAAESEQESAPAAVEKQTDDAAGEESGDKSESTADADSENADDSDLDADGS
SRRRRRRRRRKTGTDGATDATATSEDDPPNTVVHEREPRNKTRVKDEVQGISGSTRLEAK
RQRRRDGRDAGRRRPPILTESEFLARREAVDRVMVVRDRADSGQPHATTQVAVLEDGVLV
EHFVTNSASASMVGNVYLGRVQNVLPSMEAAFIDIGRGRNGVLYAGEVNWEAAGLGGNSR
KIEQALKPGDQVLVQVSKDPVGHKGARLTTQISLAGRFLVYVPGGTSTGISRKLPDTERK
RLKEILRDIVPADAGVIIRTASEGVSEEELARDVTRLQAQWAGIEEQAAAADTGKSGNPQ
ALYEEPDMLVKVIRDLFNEDFSKLVIEGEKAHTTVENYINSVAPDLLPRLEKYTPNNGID
VFAARRIDEQLAKALDRKVWLPSGGTLVIDRTEAMTVVDVNTGKFTGAGGNLEETVTRNN
LEAAEEIVRQMRLRDIGGMIVVDFIDMVLESNRDLVLRRLTECLGRDRTRHQVSEVTSLG
LVQMTRKKLGTGLVEAFSTTCEHCHGRGIIVHSEPVEVKSSDDGGSRSGSQRSESGTSRK
NKRGRGDKSPSTESNGQEAPAPEVPAVDATVKRAHPVALAMASHHHDDDETVAADSIESD
STGTSSGDDASKSADRQQDRPIDTPAATERHDVPVVDSAAEEVSAVDNESAAASTEAAPR
GRRRSRRASRAASAPVAEAAPEVGTVFVIPTPEPVAEAVVENVPAPATEVPAEEEVVVVK
RPRRRRAAARPAGPPVDGE
NT seq
3300 nt
NT seq
+upstream
nt +downstream
nt
gtgacaactcgacttctgggttggacgcgcccgggggctgaggagacttacgtggccgat
caatccccaaccgaatcagattccagcaccaccccggaatttcccgacaagatgcgcgta
cacgcgctggcgaagctgctcggtgtcaccagcaagcaggtccttgccgaagccgcagcg
ctcggtaccgaattgcgcagtgcgcagtcgagtctccaacgggacgttgcccagcggatt
cacgcctcgctgacttccgcggccgaggccatcgagccggtcgtggccgagctcgatacc
ctcatcgacccggttgtcgaggccccggttgccgaggcccctgttgcggaagagcctgtt
gcagaggctccggccgagaagcctgtcagggctcgtcgcacccgcaaaaaggtcgttgtc
gaagaaccggccgccgaagaaccttcagcagaagaagcagtggatccggctgtcgccgag
atcagcgctggactcgacgccgctgctgcgctgcagagcaaggaagccgagcagtccgat
ctgttcacttccttcgaggcgccgcagacccatcagcccgaggtggctcccgccgcgccg
caggtcccgctgttcctgcagccggatctcgaagccgccgaggtagctccgcgtcgccgt
cgcgcacgccgcgagcccgctgcaccggcggtcgtcgaagagaagcagacaactacggaa
gccgaaaccgtcgttcccgaggcagcaccggttgcagttcctgccgtcgaagagccggct
gtgaccgcaccgcaaaccgagggcgagagcgccgagtccgaggacgaggacgacgatcag
ccgcgtcgccgtcgtcgtggacgccgtggacgtgggcgtggtcgcggtgaacagggtggc
gagcagggttcggacgaagagtcggataccgctgccgaatcggagcaggaatctgcccct
gcggcagtcgagaagcaaaccgacgacgctgccggcgaagaatccggtgataagtccgag
tccaccgcggatgcggattccgagaatgccgacgattccgatctcgatgccgacggatcg
agccgccgtcgccgccgtcgtcgtcgtcgcaagaccggcaccgacggcgccaccgacgcg
actgcgacgtccgaggacgatccgccgaacaccgtcgttcacgagcgcgaacctcgcaac
aagacccgcgtcaaggacgaggtccagggcatcagtggttcgacacgtctggaagcgaag
cgtcagcgtcgccgcgacggtcgtgacgccggtcgtcgtcgtccgccgattctgaccgag
tcggagttcctcgcgcgtcgtgaggccgtcgatcgcgtcatggttgtgcgtgatcgagca
gacagcggtcagccgcatgcgactacacaggtagcagtcctcgaagacggagtgttggtc
gagcacttcgtcaccaactcggcgtccgcgtcgatggtcggcaacgtgtacctcggacgt
gtccagaacgtgctccccagcatggaagcggcgttcatcgacatcggacgtggccgcaac
ggcgttctctacgccggtgaggtcaactgggaggctgccggtctcggtggcaactcgcgc
aagatcgagcaggccctcaagccgggcgatcaggtgctcgttcaggtcagcaaggatccg
gtcggccacaaaggtgctcgactgaccacacagatttcgcttgccggtcgtttcctcgtc
tacgtgcccggtggtacgtccacgggtatcagccgcaagcttccggacaccgagcgcaag
cgtctcaaggaaatcttgcgcgacatcgttcccgccgacgccggcgtgatcattcgcacg
gcgtccgagggcgtcagcgaagaagagttggcgcgcgacgtgactcgtctgcaggctcag
tgggccggcatcgaggagcaggccgcggctgcggacaccggtaagtccggcaacccgcag
gcgctgtacgaagagcctgacatgctggtcaaggtcattcgtgatctgttcaacgaggac
ttctccaagctggtcatcgagggcgagaaggcgcatacgacggtcgagaactacatcaac
tccgttgcgcccgatctgcttccgcgactcgagaagtacacgccgaacaacggtatcgac
gtcttcgccgctcgccgtatcgacgagcagttggccaaggcactcgatcgcaaggtgtgg
ctgccgtccggcggcaccttggtgatcgatcgcaccgaggccatgaccgtcgtcgacgtc
aacaccggaaagttcaccggagccggcggaaacctcgaagagaccgttacccgcaacaac
ctcgaagcagccgaggagatcgttcgccagatgcgcctgcgggacatcggcggaatgatc
gtcgtcgacttcatcgacatggtcctcgaatcgaaccgggacctggtcctgcgtcggctc
accgaatgcctgggtcgcgatcgcacgcgccatcaggtgtcggaggtcacgtcgctcgga
ctcgtgcagatgacgcgcaagaagttgggcaccggattggtcgaggccttctcgaccacc
tgtgagcactgccacggccgcggcatcatcgtccactccgagccggtcgaggtgaagtcc
tcggacgacgggggatcgcgttcgggctcgcagcgaagcgaatccggcacctcgcgcaag
aacaagcgtggccgcggagacaagtcgccttcgaccgagtccaacggacaggaagctccg
gcgccggaggttccggctgtcgacgcgaccgtcaagcgggctcatccggtggcattggcg
atggcctcgcaccaccacgacgacgacgagaccgtcgcggccgactcgatcgagtctgat
tccaccggtacgtcttcgggggatgatgcatccaaaagtgccgatcggcaacaggatcgg
ccgatcgatactcctgctgctactgagcgccatgacgttcctgttgtggactctgctgcg
gaagaagtatccgcagtggacaacgagtcggcggcagcttcgaccgaagcagctccgcgc
ggtcgtcggcgtagtcgccgggcgtcgcgggcagcgtcggcaccggttgccgaggcagct
cccgaggtgggtacggtcttcgtgattccgactccggaacccgtggcagaagcggtcgtg
gaaaacgttccggctccggccaccgaagttccggctgaggaagaagttgtcgtcgtcaag
cgaccccgtcgcaggcgtgcagcagcacgccccgcaggtcctccggtagacggagagtaa
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