Rhodococcus erythropolis PR4: RER_40940
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Entry
RER_40940 CDS
T00881
Symbol
deaD
Name
(GenBank) probable ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rer
Rhodococcus erythropolis PR4
Pathway
rer03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rer00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RER_40940 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rer03019
]
RER_40940 (deaD)
03009 Ribosome biogenesis [BR:
rer03009
]
RER_40940 (deaD)
Enzymes [BR:
rer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RER_40940 (deaD)
Messenger RNA biogenesis [BR:
rer03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RER_40940 (deaD)
Ribosome biogenesis [BR:
rer03009
]
Prokaryotic type
rRNA helicases
RER_40940 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
UvrA_inter
HEM4
Motif
Other DBs
NCBI-ProteinID:
BAH34802
UniProt:
C1A2G7
LinkDB
All DBs
Position
complement(4502576..4504351)
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AA seq
591 aa
AA seq
DB search
MSDIERDPEPPTFADLDIDDRVLKALSDVGYESPSPIQAATIPPLLEGKDVVGLAQTGTG
KTAAFAVPVLSRIDTSIKQTQALVLAPTRELALQVAEAFGKYSAHIPGLNVLPIYGGQSY
GVQLSGLRRGAHVVVGTPGRVIDHLEKGTLDLTNLKYLVLDEADEMLKMGFQEDVERILR
DTPGDKQVALFSATMPGSIRRISKQYLNNPVEITVKSKTSTASNITQRYIQVAHQRKLDA
LTRVLEVEAFEAMIIFVRTKQATEDLAEKLRARGHSAAAINGDIVQAQRERTIGQLKNGA
LDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRQGDALLFVAPRERH
LLKSIEKATRQPLAEMQLPSVDDVNAQRVAKFGDSITESLASENLAMFRKMIEDYDQEHD
VPLIDIAAALALQSRDGEAFLLSPEPPAPPRREREPREPRPPRRFDDGPAPRSRGPEGQE
LAAYRIAVGKRHRVVPGAIVGAIANEGGLRRSDFGHISIRPDHSIVELPADLSNETLEAL
RRTRISGVLIQLQPDFGPPQGRPSGRGDRGGRDDRGGRDDRRGGGRDRYND
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatattgagcgtgaccccgaacccccaacatttgccgacctcgacatcgatgat
cgggtactgaaggcactgtcagacgtgggctacgagtcgccctcgcccattcaggctgcc
accattccgccgctgctcgaaggcaaggacgtcgtcggtctcgcacagaccggtaccggc
aagaccgcagctttcgcagttccagtcctgtcgcggatcgacacgtcgatcaagcagacc
caggcgctggtgcttgctcccacgcgtgagctggcgcttcaggttgccgaggcattcggc
aagtactccgcgcacatccccggactcaacgtgctgccgatctacggtggccagagctac
ggcgtccagctgtcgggcctgcgccgcggcgcacacgtcgtcgtcggtaccccgggtcgt
gtcatcgaccatctcgaaaagggcaccctggatctgaccaatctcaagtacctcgttctc
gacgaggccgacgagatgctcaagatggggttccaggaggacgtcgagcgcatcctccgc
gacacccccggcgacaagcaggtcgccctgttctccgcaacgatgcccggctcgattcgc
cggatctcgaagcagtacctgaacaatccggtcgagatcaccgtcaagtccaagacgtcg
accgcctcgaacatcacgcagcgctacattcaggttgctcatcagcgcaagctcgatgca
ctgacccgagtcctcgaggtcgaggcattcgaggcgatgatcatcttcgtccgtaccaag
caggccaccgaagacctggcggagaagctgcgggcccgcgggcactcggccgccgcgatc
aacggcgacatcgtccaggcacagcgtgagcggaccatcggtcagctcaagaacggcgcc
ctcgacatccttgtcgcgaccgacgttgccgctcgaggcctcgatgtcgatcgaatctcc
cacgtcgtcaactacgacatcccgcatgacacggagtcgtacgttcaccgcatcggtcgt
accggccgcgccggtcgtcagggtgacgcgttgctgttcgtcgctccgcgtgagcgtcat
ctgctcaagtccatcgagaaggcgacgcgtcagccgcttgcggagatgcagcttcccagt
gtggacgacgtcaacgcccagcgcgtggccaagttcggtgattccatcaccgagagcctg
gcctcggagaatctcgcgatgttccgcaagatgatcgaggactacgaccaggaacacgat
gttccgctcatcgacatcgctgccgctctggcattgcagtcgcgcgacggcgaagcattc
ttgctttctcccgagccgccggcaccgccgcgtcgtgagcgcgagccgcgtgaaccgcgt
ccccctcgtcgtttcgacgacggcccggctcctcgctcgcgtggacccgagggccaggag
ttggccgcataccgcattgcagtcggcaagcgtcaccgcgtcgttccgggtgccatcgtc
ggtgccatcgccaacgagggtggacttcgtcgaagcgacttcgggcacatcagcattcgc
ccggatcacagcatcgtcgagctgccggccgacctctccaacgagactctcgaagctttg
cgtcgcacacgcatctccggcgtcctgatccagctgcagcctgatttcggcccgccgcag
ggacgtccgagtggccgtggcgaccgtggtggccgggacgatcgcggtggacgtgacgac
cgccgcggtggcggacgcgatcgctacaacgactga
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